More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_4618 on replicon NC_010552
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010552  BamMC406_4618  two component LuxR family transcriptional regulator  100 
 
 
224 aa  453  1.0000000000000001e-126  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5693  two component LuxR family transcriptional regulator  75.34 
 
 
224 aa  336  1.9999999999999998e-91  Burkholderia phymatum STM815  Bacteria  normal  normal  0.247452 
 
 
-
 
NC_008543  Bcen2424_5186  two component LuxR family transcriptional regulator  68.1 
 
 
214 aa  287  1e-76  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0233056 
 
 
-
 
NC_010515  Bcenmc03_5090  two component LuxR family transcriptional regulator  68.1 
 
 
214 aa  287  1e-76  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.159727  normal 
 
 
-
 
NC_008061  Bcen_3181  two component LuxR family transcriptional regulator  68.1 
 
 
214 aa  287  1e-76  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.246114  n/a   
 
 
-
 
NC_010681  Bphyt_2407  two component transcriptional regulator, LuxR family  61.65 
 
 
220 aa  262  3e-69  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.958584 
 
 
-
 
NC_010552  BamMC406_4615  two component LuxR family transcriptional regulator  61.24 
 
 
218 aa  257  1e-67  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2459  two component LuxR family transcriptional regulator  57.87 
 
 
215 aa  245  3e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2279  two component LuxR family transcriptional regulator  57.5 
 
 
212 aa  243  1.9999999999999999e-63  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2884  two component LuxR family transcriptional regulator  57.89 
 
 
229 aa  242  3e-63  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.538425 
 
 
-
 
NC_011004  Rpal_3839  two component transcriptional regulator, LuxR family  56.67 
 
 
210 aa  239  2e-62  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.287356  n/a   
 
 
-
 
NC_010557  BamMC406_6495  two component LuxR family transcriptional regulator  58.91 
 
 
214 aa  237  9e-62  Burkholderia ambifaria MC40-6  Bacteria  normal  0.653682  normal 
 
 
-
 
NC_008392  Bamb_5742  two component LuxR family transcriptional regulator  58.91 
 
 
219 aa  237  9e-62  Burkholderia ambifaria AMMD  Bacteria  normal  0.505537  normal  0.963827 
 
 
-
 
NC_012792  Vapar_6169  two component transcriptional regulator, LuxR family  57.55 
 
 
221 aa  235  3e-61  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1685  two component transcriptional regulator, LuxR family  56.28 
 
 
215 aa  230  2e-59  Burkholderia phytofirmans PsJN  Bacteria  normal  0.166103  normal  0.907447 
 
 
-
 
NC_010501  PputW619_2317  two component LuxR family transcriptional regulator  55.29 
 
 
209 aa  229  3e-59  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010679  Bphyt_7267  two component transcriptional regulator, LuxR family  58.6 
 
 
217 aa  226  2e-58  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1519  two component transcriptional regulator, LuxR family  54.76 
 
 
228 aa  225  4e-58  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.444774  n/a   
 
 
-
 
NC_010505  Mrad2831_1268  two component LuxR family transcriptional regulator  54.85 
 
 
220 aa  221  4.9999999999999996e-57  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5548  DNA-binding response regulator, LuxR family  53.85 
 
 
212 aa  221  6e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5088  LuxR response regulator receiver  53.2 
 
 
212 aa  220  9.999999999999999e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2682  two component transcriptional regulator, LuxR family  52.49 
 
 
222 aa  218  5e-56  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012853  Rleg_5743  two component transcriptional regulator, LuxR family  51.23 
 
 
212 aa  214  9e-55  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2380  response regulator receiver protein  51.5 
 
 
208 aa  212  2.9999999999999995e-54  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2400  two component transcriptional regulator, LuxR family  52.82 
 
 
210 aa  210  1e-53  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0181  two component LuxR family transcriptional regulator  49.52 
 
 
210 aa  209  4e-53  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3511  two component transcriptional regulator, LuxR family  48.57 
 
 
209 aa  206  2e-52  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5502  two component response regulator  49.52 
 
 
212 aa  200  9.999999999999999e-51  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3729  two component LuxR family transcriptional regulator  49 
 
 
209 aa  198  3.9999999999999996e-50  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_5185  two component LuxR family transcriptional regulator  50.51 
 
 
213 aa  198  5e-50  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3713  two component LuxR family transcriptional regulator  51.38 
 
 
208 aa  197  7.999999999999999e-50  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.222966  normal 
 
 
-
 
NC_010717  PXO_00709  nodulation protein  48.73 
 
 
200 aa  197  1.0000000000000001e-49  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  hitchhiker  0.00695869  n/a   
 
 
-
 
NC_009485  BBta_7459  nodulation protein W, two-component transcriptional regulator  47.64 
 
 
219 aa  196  2.0000000000000003e-49  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0042  LuxR family DNA-binding response regulator  49.51 
 
 
212 aa  194  8.000000000000001e-49  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0038  LuxR family DNA-binding response regulator  49.51 
 
 
212 aa  194  8.000000000000001e-49  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2536  two component regulator  46.8 
 
 
204 aa  194  9e-49  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.378867 
 
 
-
 
NC_012848  Rleg_5189  two component transcriptional regulator, LuxR family  51.24 
 
 
213 aa  194  1e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.814448  normal  0.223105 
 
 
-
 
NC_008825  Mpe_A0811  two-component response regulator  47.29 
 
 
209 aa  194  1e-48  Methylibium petroleiphilum PM1  Bacteria  normal  0.184612  normal 
 
 
-
 
NC_011368  Rleg2_5152  two component transcriptional regulator, LuxR family  50.52 
 
 
207 aa  193  2e-48  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.341934  normal  0.483556 
 
 
-
 
NC_011071  Smal_2139  two component transcriptional regulator, LuxR family  47.5 
 
 
213 aa  193  2e-48  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0943  two component LuxR family transcriptional regulator  47 
 
 
214 aa  191  6e-48  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5310  two component LuxR family transcriptional regulator  47.71 
 
 
228 aa  189  2.9999999999999997e-47  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.659396 
 
 
-
 
NC_009719  Plav_2356  response regulator receiver protein  48.74 
 
 
215 aa  186  2e-46  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.504321 
 
 
-
 
NC_009092  Shew_3240  two component LuxR family transcriptional regulator  46.28 
 
 
207 aa  187  2e-46  Shewanella loihica PV-4  Bacteria  normal  normal  0.989265 
 
 
-
 
NC_008009  Acid345_2445  two component LuxR family transcriptional regulator  47.76 
 
 
226 aa  186  4e-46  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2358  response regulator receiver protein  47.98 
 
 
233 aa  185  5e-46  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.119902  normal  0.5156 
 
 
-
 
NC_007778  RPB_0211  two component LuxR family transcriptional regulator  50.25 
 
 
228 aa  184  1.0000000000000001e-45  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.664514  normal 
 
 
-
 
NC_010002  Daci_1553  two component LuxR family transcriptional regulator  47.52 
 
 
212 aa  184  1.0000000000000001e-45  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  44.28 
 
 
206 aa  183  2.0000000000000003e-45  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.812865 
 
 
-
 
NC_007974  Rmet_5318  two component LuxR family transcriptional regulator  50.54 
 
 
247 aa  183  2.0000000000000003e-45  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00034283  normal  0.590249 
 
 
-
 
NC_012848  Rleg_5187  two component transcriptional regulator, LuxR family  48.29 
 
 
230 aa  182  4.0000000000000006e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.209149 
 
 
-
 
NC_007298  Daro_3812  two component LuxR family transcriptional regulator  47.06 
 
 
208 aa  180  2e-44  Dechloromonas aromatica RCB  Bacteria  normal  0.922787  normal  0.026414 
 
 
-
 
NC_011368  Rleg2_5458  two component transcriptional regulator, LuxR family  50 
 
 
213 aa  179  2e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0682828  normal  0.0164406 
 
 
-
 
NC_012858  Rleg_6853  two component transcriptional regulator, LuxR family  45.81 
 
 
223 aa  179  2e-44  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5456  two component transcriptional regulator, LuxR family  48.04 
 
 
230 aa  179  2.9999999999999997e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.154935  hitchhiker  0.00976207 
 
 
-
 
NC_007492  Pfl01_2249  two component LuxR family transcriptional regulator  47.92 
 
 
204 aa  179  4e-44  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5540  response regulator receiver protein  44.6 
 
 
226 aa  179  4e-44  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0494649 
 
 
-
 
NC_009512  Pput_2871  response regulator receiver protein  44.39 
 
 
206 aa  178  4.999999999999999e-44  Pseudomonas putida F1  Bacteria  normal  0.313361  normal  0.346414 
 
 
-
 
NC_010622  Bphy_0645  two component LuxR family transcriptional regulator  47.98 
 
 
240 aa  178  8e-44  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_1946  two component transcriptional regulator, LuxR family  50.79 
 
 
220 aa  177  1e-43  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3389  response regulator receiver protein  48.08 
 
 
211 aa  176  2e-43  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2096  two component LuxR family transcriptional regulator  44.67 
 
 
212 aa  172  2.9999999999999996e-42  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1545  two component transcriptional regulator, LuxR family  42.03 
 
 
218 aa  171  6.999999999999999e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0982964  normal  0.0521608 
 
 
-
 
NC_007973  Rmet_1915  two component LuxR family transcriptional regulator  63.36 
 
 
135 aa  168  6e-41  Cupriavidus metallidurans CH34  Bacteria  normal  0.463472  normal 
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  43.37 
 
 
202 aa  167  1e-40  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal 
 
 
-
 
NC_010322  PputGB1_2371  two component LuxR family transcriptional regulator  43.94 
 
 
209 aa  166  2.9999999999999998e-40  Pseudomonas putida GB-1  Bacteria  normal  0.820742  normal 
 
 
-
 
NC_007492  Pfl01_5708  two component LuxR family transcriptional regulator  46.77 
 
 
221 aa  166  2.9999999999999998e-40  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.306208 
 
 
-
 
NC_002947  PP_3551  LuxR family DNA-binding response regulator  43.43 
 
 
210 aa  162  3e-39  Pseudomonas putida KT2440  Bacteria  normal  0.178316  normal 
 
 
-
 
NC_010681  Bphyt_2166  two component transcriptional regulator, LuxR family  44.9 
 
 
220 aa  162  3e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2223  response regulator receiver protein  43.43 
 
 
210 aa  162  3e-39  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  43.94 
 
 
209 aa  160  1e-38  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.518394 
 
 
-
 
NC_012560  Avin_25360  Response regulator, LuxR family  39.45 
 
 
246 aa  160  2e-38  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3866  two component transcriptional regulator, LuxR family  40.81 
 
 
224 aa  160  2e-38  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1701  two component LuxR family transcriptional regulator  40.82 
 
 
201 aa  157  8e-38  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0166117  n/a   
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  157  9e-38  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  157  9e-38  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  157  9e-38  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  157  9e-38  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  157  9e-38  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  157  9e-38  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  157  9e-38  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  41.79 
 
 
212 aa  157  9e-38  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_010086  Bmul_5088  two component LuxR family transcriptional regulator  43.84 
 
 
241 aa  157  1e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.685625 
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  41.84 
 
 
214 aa  157  2e-37  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  41.79 
 
 
212 aa  156  2e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  41.79 
 
 
212 aa  156  2e-37  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  41.79 
 
 
212 aa  156  2e-37  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5633  response regulator receiver protein  41.71 
 
 
218 aa  156  2e-37  Sinorhizobium medicae WSM419  Bacteria  normal  0.938686  normal  0.508699 
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  41.79 
 
 
212 aa  156  2e-37  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  41.79 
 
 
212 aa  156  2e-37  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal 
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  41.79 
 
 
212 aa  156  2e-37  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6902  two component transcriptional regulator, LuxR family  43.15 
 
 
210 aa  155  4e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.173656  normal  0.571333 
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  40.76 
 
 
214 aa  155  4e-37  Burkholderia phymatum STM815  Bacteria  normal  normal  0.781461 
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  41.29 
 
 
214 aa  155  4e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_008391  Bamb_5346  two component LuxR family transcriptional regulator  43.16 
 
 
210 aa  155  4e-37  Burkholderia ambifaria AMMD  Bacteria  normal  0.0593225  normal  0.752943 
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  41.29 
 
 
214 aa  155  5.0000000000000005e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.274992 
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  41.29 
 
 
212 aa  155  5.0000000000000005e-37  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_008009  Acid345_0845  response regulator receiver protein  49.38 
 
 
183 aa  155  6e-37  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2505  two component LuxR family transcriptional regulator  44.33 
 
 
210 aa  154  7e-37  Burkholderia sp. 383  Bacteria  normal  0.382458  normal  0.897172 
 
 
-
 
NC_007794  Saro_1578  two component LuxR family transcriptional regulator  40.61 
 
 
207 aa  154  7e-37  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.661779  n/a   
 
 
-
 
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