Gene Vapar_6169 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6169 
Symbol 
ID7975059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp898701 
End bp899366 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content68% 
IMG OID644796739 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_002947998 
Protein GI239820813 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATCCTG CCACCGATCT CTCCCCACCC TTGCAGGCGG ACCGCGATAC GCGCGTCGTC 
TACATCGTCG ATGACGACGA ACTCGTGCGC AATGCGCTGG GCAGCCTGCT GCGTTCGATC 
GACCTGGAGG TCCGCACCTT CGCCGACACC GAGGAATTCC TTGCCGCGCC GCGTGCCGGC 
GGCGCTTCCT GCCTGGTGCT GGACGTGCGA CTGCGCGGCC AGAGCGGCCT GGCCTTGCAG 
CAAACCCTGC TGCAGCCCGG CCGCGCGCCG ATCCCCATCA TCTTCATGAC CGGCCACGGC 
GACATCGCCA TGACCGTGCG GGCGATGAAG GCCGGCGCCA TGGACTTCCT GAGCAAGCCC 
TTTCGCGAGC AGGACATGAT CGATGCGGTC ACCGCCGCGC TGGACAAGGA CGCCAGGCGC 
CTGGCGCTCG GGCACTCGCT GCATGCCTTG CGCGTGTGCT GGGACTCGCT CACGCCGCGC 
GAGCGCGAGG TGGTGCAGCA TGTGGCCGCG GGCCTGATGA ACAAGCAGAT CGCCGCCCGC 
ATGGGCATTG CAGAGATCAC CGCCAAGATC CATCGGGGCC AGGCGATGCG CAAGATGAAC 
TCGCGCTCGG TCGCGGAGCT GGTGCGCAAG ATGGAAGCGC TCGGCCTCCT GCAGGCCGCG 
CACTGA
 
Protein sequence
MHPATDLSPP LQADRDTRVV YIVDDDELVR NALGSLLRSI DLEVRTFADT EEFLAAPRAG 
GASCLVLDVR LRGQSGLALQ QTLLQPGRAP IPIIFMTGHG DIAMTVRAMK AGAMDFLSKP 
FREQDMIDAV TAALDKDARR LALGHSLHAL RVCWDSLTPR EREVVQHVAA GLMNKQIAAR 
MGIAEITAKI HRGQAMRKMN SRSVAELVRK MEALGLLQAA H