210 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Shew_0001  CDS  NC_009092  111  1490  +  1380  chromosomal replication initiation protein  YP_001092133  decreased coverage  0.00000781636  unclonable  0.00000344978  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0023  CDS  NC_009092  27056  27583  +  528  protoporphyrinogen oxidase  YP_001092155  decreased coverage  0.000000262535  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0031  CDS  NC_009092  33256  34416  +  1161  RND family efflux transporter MFP subunit  YP_001092163  decreased coverage  0.0000318769  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0096  CDS  NC_009092  107692  108228  +  537  hypothetical protein  YP_001092227  decreased coverage  0.0000129427  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0098  CDS  NC_009092  108959  110218  +  1260  integral membrane sensor signal transduction histidine kinase  YP_001092229  decreased coverage  0.00301262  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0144  CDS  NC_009092  160907  162091  +  1185  elongation factor Tu  YP_001092275  decreased coverage  0.00000195175  normal  0.039031  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0148  CDS  NC_009092  163857  164558  +  702  ribosomal protein L1  YP_001092279  decreased coverage  0.000000518131  normal  0.0355944  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0149  CDS  NC_009092  164826  165323  +  498  50S ribosomal protein L10  YP_001092280  decreased coverage  0.000000191294  normal  0.034689  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0152  CDS  NC_009092  170098  174312  +  4215  DNA-directed RNA polymerase subunit beta'  YP_001092283  normal  0.10614  decreased coverage  0.000115392  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0153  CDS  NC_009092  174503  174877  +  375  30S ribosomal protein S12  YP_001092284  hitchhiker  0.00144977  decreased coverage  0.0000385897  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0154  CDS  NC_009092  174958  175428  +  471  30S ribosomal protein S7  YP_001092285  hitchhiker  0.00529705  decreased coverage  0.0000385897  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0155  CDS  NC_009092  175504  177600  +  2097  elongation factor G  YP_001092286  normal  0.0129651  decreased coverage  0.0000592155  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0156  CDS  NC_009092  177680  178864  +  1185  elongation factor Tu  YP_001092287  hitchhiker  0.00000313949  decreased coverage  0.000051786  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0157  CDS  NC_009092  179226  179537  +  312  30S ribosomal protein S10  YP_001092288  unclonable  0.00000000255753  decreased coverage  0.0000448668  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0158  CDS  NC_009092  179565  180203  +  639  50S ribosomal protein L3  YP_001092289  hitchhiker  0.000000206645  decreased coverage  0.0000470561  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0159  CDS  NC_009092  180220  180825  +  606  50S ribosomal protein L4  YP_001092290  hitchhiker  0.0000107057  decreased coverage  0.0000448668  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0160  CDS  NC_009092  180822  181121  +  300  50S ribosomal protein L23  YP_001092291  hitchhiker  0.0000144621  decreased coverage  0.0000412321  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0161  CDS  NC_009092  181138  181965  +  828  50S ribosomal protein L2  YP_001092292  hitchhiker  0.000128131  decreased coverage  0.000051786  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0162  CDS  NC_009092  181977  182255  +  279  30S ribosomal protein S19  YP_001092293  hitchhiker  0.0000728304  decreased coverage  0.0000475067  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0163  CDS  NC_009092  182271  182603  +  333  50S ribosomal protein L22  YP_001092294  hitchhiker  0.0000850597  decreased coverage  0.0000466099  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0164  CDS  NC_009092  182613  183302  +  690  30S ribosomal protein S3  YP_001092295  hitchhiker  0.0000022982  decreased coverage  0.0000484078  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0166  CDS  NC_009092  183724  183915  +  192  50S ribosomal protein L29  YP_001092297  decreased coverage  0.0000000300233  hitchhiker  0.000293635  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0167  CDS  NC_009092  183915  184163  +  249  30S ribosomal protein S17  YP_001092298  decreased coverage  0.0000000350413  hitchhiker  0.000281031  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0171  CDS  NC_009092  185600  185905  +  306  30S ribosomal protein S14  YP_001092302  hitchhiker  0.0000191615  decreased coverage  0.0000502877  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0172  CDS  NC_009092  185929  186321  +  393  30S ribosomal protein S8  YP_001092303  hitchhiker  0.00000595155  decreased coverage  0.000051786  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0173  CDS  NC_009092  186332  186862  +  531  50S ribosomal protein L6  YP_001092304  hitchhiker  0.0000111848  decreased coverage  0.0000538106  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0174  CDS  NC_009092  186873  187223  +  351  50S ribosomal protein L18  YP_001092305  hitchhiker  0.00002597  decreased coverage  0.0000543254  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0175  CDS  NC_009092  187237  187740  +  504  30S ribosomal protein S5  YP_001092306  hitchhiker  0.0000490298  decreased coverage  0.0000558993  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0201  CDS  NC_009092  213864  215024  -  1161  acetylornithine deacetylase  YP_001092332  decreased coverage  0.000604653  normal  0.090573  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0202  CDS  NC_009092  215298  216278  +  981  N-acetyl-gamma-glutamyl-phosphate reductase  YP_001092333  decreased coverage  0.0000978996  normal  0.083139  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0330  CDS  NC_009092  374731  375699  -  969  nifR3 family TIM-barrel protein  YP_001092461  decreased coverage  0.0000590766  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0440  CDS  NC_009092  490170  491024  -  855  methyltransferase type 12  YP_001092571  decreased coverage  0.000034912  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0447  CDS  NC_009092  497998  499203  +  1206  hypothetical protein  YP_001092578  decreased coverage  0.000225719  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0482  CDS  NC_009092  539397  540563  +  1167  hypothetical protein  YP_001092613  decreased coverage  0.00000379744  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0534  CDS  NC_009092  606789  608156  +  1368  major facilitator transporter  YP_001092665  decreased coverage  0.0000100009  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0562  CDS  NC_009092  637476  637949  +  474  hypothetical protein  YP_001092693  decreased coverage  0.00000200674  normal  0.209641  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0571  CDS  NC_009092  646761  647975  +  1215  cytochrome b/b6 domain-containing protein  YP_001092702  decreased coverage  0.0000252718  normal  0.241378  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0729  CDS  NC_009092  830300  832000  +  1701  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_001092860  decreased coverage  0.000675699  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0777  CDS  NC_009092  888003  888722  -  720  two-component response regulator  YP_001092908  decreased coverage  0.00000399592  decreased coverage  0.000157294  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0805  CDS  NC_009092  917999  918394  -  396  hypothetical protein  YP_001092936  decreased coverage  0.00341029  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0934  CDS  NC_009092  1067836  1068750  -  915  TPR repeat-containing protein  YP_001093064  decreased coverage  0.000000927672  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0940  CDS  NC_009092  1081337  1082449  +  1113  permease YjgP/YjgQ family protein  YP_001093070  decreased coverage  0.000695544  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0972  CDS  NC_009092  1116079  1117428  +  1350  glutamate--ammonia ligase  YP_001093102  decreased coverage  0.00809428  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0992  CDS  NC_009092  1147752  1148849  -  1098  BsuBIPstI restriction endonuclease domain-containing protein  YP_001093122  decreased coverage  0.00476736  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_0999  CDS  NC_009092  1157719  1157934  -  216  30S ribosomal protein S21  YP_001093129  decreased coverage  0.00000187579  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1018  CDS  NC_009092  1177601  1178074  -  474  hypothetical protein  YP_001093148  decreased coverage  0.00000940491  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1021  CDS  NC_009092  1179811  1181286  -  1476  peptidase M23B  YP_001093151  decreased coverage  0.000137565  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1076  CDS  NC_009092  1239375  1239728  +  354  Trp operon repressor  YP_001093206  decreased coverage  0.0000000888346  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1077  CDS  NC_009092  1239804  1240235  -  432  hypothetical protein  YP_001093207  decreased coverage  0.000000135433  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1088  CDS  NC_009092  1252316  1253953  -  1638  glucose-6-phosphate isomerase  YP_001093218  decreased coverage  0.000310593  normal  0.0429778  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1112  CDS  NC_009092  1281505  1284129  +  2625  TonB-dependent receptor  YP_001093242  decreased coverage  0.00179427  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1119  CDS  NC_009092  1294566  1295822  +  1257  glucose/galactose transporter  YP_001093249  decreased coverage  0.00000391013  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1131  CDS  NC_009092  1307332  1308471  -  1140  putative oxygen-independent coproporphyrinogen III oxidase  YP_001093261  decreased coverage  0.00230562  normal  0.548541  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1147  CDS  NC_009092  1322126  1322689  +  564  hypothetical protein  YP_001093277  decreased coverage  0.00658881  normal  0.0364761  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1153    NC_009092  1326788  1326934  -  147      hitchhiker  0.00021489  decreased coverage  0.00439648  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1154  CDS  NC_009092  1326958  1327611  -  654  hypothetical protein  YP_001093283  decreased coverage  0.0000736449  decreased coverage  0.00491561  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1155  CDS  NC_009092  1327929  1328936  +  1008  threonine aldolase  YP_001093284  unclonable  0.0000000619042  decreased coverage  0.00631546  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1156  CDS  NC_009092  1329016  1329849  -  834  hypothetical protein  YP_001093285  hitchhiker  0.000585757  decreased coverage  0.00659921  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1157  CDS  NC_009092  1329935  1331572  -  1638  alkaline phosphatase  YP_001093286  normal  1  decreased coverage  0.00798229  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1158  CDS  NC_009092  1331587  1333095  -  1509  alkaline phosphatase  YP_001093287  normal  1  decreased coverage  0.0069994  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1159  CDS  NC_009092  1333367  1333735  +  369  thioesterase superfamily protein  YP_001093288  normal  1  decreased coverage  0.00426691  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1160  CDS  NC_009092  1333920  1334126  -  207  hypothetical protein  YP_001093289  normal  1  decreased coverage  0.00416619  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1161  CDS  NC_009092  1334285  1335586  -  1302  NADH dehydrogenase  YP_001093290  normal  1  decreased coverage  0.00528742  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1162  CDS  NC_009092  1335899  1336273  -  375  hypothetical protein  YP_001093291  normal  1  decreased coverage  0.00416619  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1190  CDS  NC_009092  1382662  1383138  +  477  6,7-dimethyl-8-ribityllumazine synthase  YP_001093319  decreased coverage  0.00000176643  normal  0.904135  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1204  CDS  NC_009092  1398573  1400210  +  1638  CTP synthetase  YP_001093333  decreased coverage  0.000204322  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1205  CDS  NC_009092  1400342  1401637  +  1296  phosphopyruvate hydratase  YP_001093334  decreased coverage  0.000056862  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1218  CDS  NC_009092  1415710  1415907  +  198  carbon storage regulator  YP_001093347  decreased coverage  0.0000000555934  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1235  CDS  NC_009092  1435986  1436885  +  900  hypothetical protein  YP_001093364  decreased coverage  0.00000110146  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1300  CDS  NC_009092  1502607  1504037  -  1431  putative transglycosylase  YP_001093429  decreased coverage  0.0000125661  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1302  CDS  NC_009092  1509487  1511043  +  1557  cytochrome bd ubiquinol oxidase, subunit I  YP_001093431  decreased coverage  0.0000643415  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1402  CDS  NC_009092  1614889  1615764  +  876  glucose-1-phosphate thymidylyltransferase  YP_001093530  normal  1  decreased coverage  0.00196644  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1403  CDS  NC_009092  1615774  1616640  +  867  dTDP-4-dehydrorhamnose reductase  YP_001093531  normal  1  decreased coverage  0.00211248  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1404  CDS  NC_009092  1616643  1617188  +  546  dTDP-4-dehydrorhamnose 3,5-epimerase  YP_001093532  normal  1  decreased coverage  0.00202914  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1405  CDS  NC_009092  1617188  1618246  +  1059  glycosyl transferase, group 1  YP_001093533  normal  1  decreased coverage  0.0023982  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1406  CDS  NC_009092  1618274  1619782  +  1509  polysaccharide biosynthesis protein  YP_001093534  normal  1  decreased coverage  0.00286894  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1413  CDS  NC_009092  1626400  1627377  +  978  hypothetical protein  YP_001093541  normal  1  decreased coverage  0.00241819  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1414  CDS  NC_009092  1627377  1628186  +  810  glycosyl transferase family protein  YP_001093542  normal  1  decreased coverage  0.00218094  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1415    NC_009092  1628388  1629307  +  920      normal  1  decreased coverage  0.00216347  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1431  CDS  NC_009092  1646533  1646988  -  456  hypothetical protein  YP_001093557  decreased coverage  0.0000096503  normal  0.140917  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1504  CDS  NC_009092  1727129  1727560  +  432  GCN5-related N-acetyltransferase  YP_001093630  decreased coverage  0.00105907  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1537  CDS  NC_009092  1765328  1766617  +  1290  FAD dependent oxidoreductase  YP_001093663  decreased coverage  0.000289011  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1548  CDS  NC_009092  1776462  1777274  -  813  hypothetical protein  YP_001093674  decreased coverage  0.0000386745  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1559  CDS  NC_009092  1789949  1790566  -  618  hypothetical protein  YP_001093685  decreased coverage  0.0000960005  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1560  CDS  NC_009092  1790570  1791685  -  1116  tRNA-specific 2-thiouridylase MnmA  YP_001093686  decreased coverage  0.0000033565  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1568  CDS  NC_009092  1799358  1800062  -  705  arginyl-tRNA-protein transferase  YP_001093694  decreased coverage  0.000000198847  normal  0.769175  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1569  CDS  NC_009092  1800052  1800762  -  711  leucyl/phenylalanyl-tRNA--protein transferase  YP_001093695  decreased coverage  0.00000020464  normal  0.81248  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1603  CDS  NC_009092  1835440  1836186  +  747  3-oxoacyl-(acyl-carrier-protein) reductase  YP_001093729  unclonable  0.0000000401343  decreased coverage  0.000161546  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1604  CDS  NC_009092  1836347  1836580  +  234  acyl carrier protein  YP_001093730  unclonable  0.0000000038664  decreased coverage  0.000139314  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1606  CDS  NC_009092  1838176  1838508  +  333  hypothetical protein  YP_001093732  normal  1  decreased coverage  0.000122241  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1607  CDS  NC_009092  1838586  1839074  +  489  thioesterase superfamily protein  YP_001093733  normal  1  decreased coverage  0.000128786  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1608  CDS  NC_009092  1839098  1840681  +  1584  carbohydrate kinase, FGGY  YP_001093734  normal  1  decreased coverage  0.00017495  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1609  CDS  NC_009092  1840705  1841580  +  876  6-phosphogluconate dehydrogenase, NAD-binding  YP_001093735  normal  1  decreased coverage  0.000179577  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1610  CDS  NC_009092  1841674  1842564  -  891  cytidine deaminase  YP_001093736  normal  1  decreased coverage  0.000173309  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1619  CDS  NC_009092  1850856  1852769  +  1914  arginine decarboxylase  YP_001093745  decreased coverage  0.000092888  normal  0.0751508  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1631  CDS  NC_009092  1866451  1867032  -  582  hypothetical protein  YP_001093757  decreased coverage  0.000294763  normal  0.53809  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1632  CDS  NC_009092  1867128  1868360  +  1233  LolC/E family lipoprotein releasing system, transmembrane protein  YP_001093758  decreased coverage  0.0000222973  normal  0.613387  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1667  CDS  NC_009092  1915940  1917130  +  1191  acetyl-CoA acetyltransferase  YP_001093793  decreased coverage  0.00240927  normal  0.0395085  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1688  CDS  NC_009092  1940184  1942316  -  2133  TonB-dependent receptor  YP_001093814  decreased coverage  0.00738992  normal  0.0180451  Shewanella loihica PV-4  Bacteria 
 
 
-
 
Shew_1735  CDS  NC_009092  1985370  1987511  +  2142  TonB-dependent receptor  YP_001093861  decreased coverage  0.00374581  normal  1  Shewanella loihica PV-4  Bacteria 
 
 
-
 
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