Gene Shew_1402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1402 
Symbol 
ID4923174 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1614889 
End bp1615764 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content39% 
IMG OID640162943 
Productglucose-1-phosphate thymidylyltransferase 
Protein accessionYP_001093530 
Protein GI127512333 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1209] dTDP-glucose pyrophosphorylase 
TIGRFAM ID[TIGR01207] glucose-1-phosphate thymidylyltransferase, short form 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00196644 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAAGGCA TTGTTTTAGC CGGTGGCTCA GGAACGCGAT TATACCCTTT GACTAGAGGC 
ATATCTAAGC AATTGTTGCC CGTTTACGAC AAACCAATGA TTTATTACCC TATATCAACG
CTGATGTTGG CAGGTATCCG GGACATTTTG ATCATTACAA CGCCTGAAGA TAATGAAAGC
TTTAAACGCC TGCTAGGTGA TGGTAGTAAT TACGGAATTA ATCTTGAGTA TGCCATTCAA
GAAAGACCTG ATGGTTTAGC ACAAGCCTTT ACTATTGGCG AAGACTTTAT AGGTGATGAT
AGTTGCTGTT TAGTGTTAGG TGACAATATT TTTTATGGTC AATCTTTTAC TAAAATGCTA
CTAAATGCGG CTAATCGTGA GCAGGGGGCG ACGGTATTTG GATATCAGGT GAAAGATCCA
GAGCGTTTTG GCGTGGTAGA GTTTGACGAT GATATGCGCG CTGTTTCTAT AGAGGAAAAA
CCACAGAATC CAAAGTCCGA TTATGCTGTA ACAGGTTTGT ATTTCTACGA TAACCGTGTT
GTTGAATTGG CAAAACAGGT GGAACCTTCT GAACGCGGAG AATTAGAAAT TACAACGCTC
AATGAAATGT ACCTTAACCA TGGTTCTTTG AATGTAGAGC TTTTAGGTCG TGGTTTTGCA
TGGTTAGACA CTGGAACACA TGAAAGTTTG CATGAGGCAG CTTCATTTGT TCAAACATTA
GAGCATGTAC AAGGATTAAA GGTTGCCTGT TTAGAAGAAA TAGCATTTCA ACAGGGCTGG
TTAAATCAAG AAGATTTATT ACGAATTGCA GAGCCTATGT TGAAAAACGA TTATGGTCAG
TATCTACATA AATTAGCTAC AAAGTCTGAT AAATAG
 
Protein sequence
MKGIVLAGGS GTRLYPLTRG ISKQLLPVYD KPMIYYPIST LMLAGIRDIL IITTPEDNES 
FKRLLGDGSN YGINLEYAIQ ERPDGLAQAF TIGEDFIGDD SCCLVLGDNI FYGQSFTKML
LNAANREQGA TVFGYQVKDP ERFGVVEFDD DMRAVSIEEK PQNPKSDYAV TGLYFYDNRV
VELAKQVEPS ERGELEITTL NEMYLNHGSL NVELLGRGFA WLDTGTHESL HEAASFVQTL
EHVQGLKVAC LEEIAFQQGW LNQEDLLRIA EPMLKNDYGQ YLHKLATKSD K