Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1402 |
Symbol | |
ID | 4923174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1614889 |
End bp | 1615764 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640162943 |
Product | glucose-1-phosphate thymidylyltransferase |
Protein accession | YP_001093530 |
Protein GI | 127512333 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1209] dTDP-glucose pyrophosphorylase |
TIGRFAM ID | [TIGR01207] glucose-1-phosphate thymidylyltransferase, short form |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00196644 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAAAGGCA TTGTTTTAGC CGGTGGCTCA GGAACGCGAT TATACCCTTT GACTAGAGGC ATATCTAAGC AATTGTTGCC CGTTTACGAC AAACCAATGA TTTATTACCC TATATCAACG CTGATGTTGG CAGGTATCCG GGACATTTTG ATCATTACAA CGCCTGAAGA TAATGAAAGC TTTAAACGCC TGCTAGGTGA TGGTAGTAAT TACGGAATTA ATCTTGAGTA TGCCATTCAA GAAAGACCTG ATGGTTTAGC ACAAGCCTTT ACTATTGGCG AAGACTTTAT AGGTGATGAT AGTTGCTGTT TAGTGTTAGG TGACAATATT TTTTATGGTC AATCTTTTAC TAAAATGCTA CTAAATGCGG CTAATCGTGA GCAGGGGGCG ACGGTATTTG GATATCAGGT GAAAGATCCA GAGCGTTTTG GCGTGGTAGA GTTTGACGAT GATATGCGCG CTGTTTCTAT AGAGGAAAAA CCACAGAATC CAAAGTCCGA TTATGCTGTA ACAGGTTTGT ATTTCTACGA TAACCGTGTT GTTGAATTGG CAAAACAGGT GGAACCTTCT GAACGCGGAG AATTAGAAAT TACAACGCTC AATGAAATGT ACCTTAACCA TGGTTCTTTG AATGTAGAGC TTTTAGGTCG TGGTTTTGCA TGGTTAGACA CTGGAACACA TGAAAGTTTG CATGAGGCAG CTTCATTTGT TCAAACATTA GAGCATGTAC AAGGATTAAA GGTTGCCTGT TTAGAAGAAA TAGCATTTCA ACAGGGCTGG TTAAATCAAG AAGATTTATT ACGAATTGCA GAGCCTATGT TGAAAAACGA TTATGGTCAG TATCTACATA AATTAGCTAC AAAGTCTGAT AAATAG
|
Protein sequence | MKGIVLAGGS GTRLYPLTRG ISKQLLPVYD KPMIYYPIST LMLAGIRDIL IITTPEDNES FKRLLGDGSN YGINLEYAIQ ERPDGLAQAF TIGEDFIGDD SCCLVLGDNI FYGQSFTKML LNAANREQGA TVFGYQVKDP ERFGVVEFDD DMRAVSIEEK PQNPKSDYAV TGLYFYDNRV VELAKQVEPS ERGELEITTL NEMYLNHGSL NVELLGRGFA WLDTGTHESL HEAASFVQTL EHVQGLKVAC LEEIAFQQGW LNQEDLLRIA EPMLKNDYGQ YLHKLATKSD K
|
| |