| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1076 |
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| Symbol | |
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| ID | 4920944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1239375 |
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| End bp | 1239728 |
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| Gene Length | 354 bp |
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| Protein Length | 117 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640162609 |
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| Product | Trp operon repressor |
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| Protein accession | YP_001093206 |
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| Protein GI | 127512009 |
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| COG category | [K] Transcription |
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| COG ID | [COG2973] Trp operon repressor |
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| TIGRFAM ID | [TIGR01321] trp operon repressor, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000888346 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCCAGA TAGCCAGCGC GACAGGTTTC TTGGTACACT TGCTTGTACT GGTAGGCAAT
GACAGCTTAG GAGCCAAAGT GCGCGCAAAT TGGGATCTGG TTTTAGAAAA AGTGGTCAAC
CATCAAGACA CCGACGCCTT GATGGATCTG TTCGATTTGC TGCTCACTGA AGAGGAGCGC
AGCGCCATCG CCGGGCGGCT GAAGGTGTTT CAGGCCTTGC TGCTGGGAGA GATGAGCCAG
CGACAGATTG CCGCCGAGTT CGAGATCAGT ATCGCCACCA TCACACGTTG TTCAAATTAC
CTCAAACATA TGCCAGCAGA GCAGCGCGAG CGCATCAAGG CGCTCATTCT CTAA
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| Protein sequence | MAQIASATGF LVHLLVLVGN DSLGAKVRAN WDLVLEKVVN HQDTDALMDL FDLLLTEEER
SAIAGRLKVF QALLLGEMSQ RQIAAEFEIS IATITRCSNY LKHMPAEQRE RIKALIL
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