| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0152 |
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| Symbol | |
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| ID | 4923304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 170098 |
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| End bp | 174312 |
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| Gene Length | 4215 bp |
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| Protein Length | 1404 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640161671 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001092283 |
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| Protein GI | 127511086 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.10614 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000115392 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAACAG CAAAGCAAGA CTGAAGAATT TGAAGGCATC
AAGATCGGCC TAGCGTCGCC TGATCTGATC CGCTCTTGGT CATTTGGTGA AGTTAAGAAG
CCAGAAACCA TCAACTACCG TACTTTCAAG CCTGAGCGTG AAGGTTTGTT CTGTGCGCGT
ATTTTTGGTC CAGTTAAAGA CTACGAGTGT TTATGCGGTA AGTATAAGCG CCTTAAGCAC
CGTGGTGTGA TTTGTGAGAA GTGTGGCGTA GAAGTTACCC AGACTAAAGT ACGTCGTGAG
CGTATGGGTC ACATCGATCT AGCCAGCCCA GTAGCGCACA TTTGGTTCTT GAAGTCTCTG
CCGTCTCGTA TCGGTTTGAT GCTGGATATG ACTCTGCGTG ATATCGAACG TGTGCTTTAC
TTCGAATCTT TCGTCGTGAT CGAGCCTGGC ATGACCAGCC TCGAGCGCGG TCAGATGCTG
ACTGAGGAAA ACTACCTCGA CGCACTCGAA GAGTACGGTG ATGAGTTTGA AGCCAAGATG
GGTGCCGAGG CAGTACTTGA GCTGCTGCGT GCTATCGATC TTGAGAAAGA GATTGAAGAG
ATGCGCGAAG AGCTGCCATC TATCAACTCT GAGACTCGTC GTAAGAAGAT CACTAAGCGT
CTGAAACTGA TTGAGGCCTT CTACCAGTCT GGCAACAAGC CAGAGTGGAT GATCCTCAAG
GTGCTACCGG TTCTGCCACC TGATCTGCGT CCATTGGTTC CACTGGATGG CGGTCGTTTC
GCGACTTCAG ATCTGAACGA TCTGTATCGC CGCGTGATTA ACCGTAACAA CCGTCTGAAG
CGTCTGTTAG ACCTAGCTGC ACCGGACATC ATCGTGCGCA ACGAAAAGCG TATGCTGCAA
GAGTCTGTTG ATGCGCTATT GGATAACGGT CGTCGCGGTC GTGCGATCAC GGGTTCTAAC
AAGCGTCCTC TGAAATCTTT GGCCGATATG ATCAAGGGTA AGCAGGGTCG TTTCCGTCAG
AACCTACTGG GTAAGCGTGT TGACTACTCA GGCCGTTCGG TAATTACCGT AGGTCCTACT
CTGCGTCTGC ATCAGTGTGG TCTGCCTAAG AAGATGGCAC TTGAGCTGTT CAAGCCATTC
ATCTACGGCA AGCTGGAAGG TCGTGGCCTG GCTACTACCA TCAAAGCTGC TAAGAAGATG
GTTGAGCGCG AAGTACCAGA GGTTTGGGAC GTACTCGATG ACGTGATCCG TGAGCATCCT
GTGATGCTTA ACCGTGCACC AACACTTCAC CGTCTTGGTA TCCAGGCGTT TGAGCCGGTA
CTGATTGAAG GTAAAGCGAT CCAACTGCAC CCATTGGTGT GTGCGGCATA CAACGCTGAC
TTCGATGGTG ACCAGATGGC GGTTCACGTG CCACTGACGC TAGAAGCTCA GTTGGAAGCG
CGTTCACTCA TGATGTCTAC CAACAACATC CTGTCACCTG CGAACGGTGA GCCGGTGATC
ACACCGTCAC AGGACGTTGT ATTGGGTCTG TACTACACCA GCCGTGAGCG TATCAACGGC
CGCGGTGAAG GCATGGCATT CGAATCTGTT GCCGAAGTAG AAAAGGCATA CCGTACTGGC
GTTGCCGAGC TGCATGCTCG CGTTAAGGTA CGTATTACCG AGACTACTAT CGCTGAAGAC
GGCGAGCGCA CCGAGTCACG TCGTATCGTA GATACTACTG TGGGCCGTGC CCTGTTGTCT
CAGGTTCTGC CAAAAGGCCT TTCTTATGAT CTGGTTAACC AGAACATGGG TAAGAAGCAG
ATCTCTAAGC TATTGAACAC CTGTTATCGT CAGCTAGGTC TGAAAGATAC CGTTATCTTT
GCTGACCAAC TGATGTATAC CGGTTTCCAC TTCGCGACCG TTTCTGGTGC GTCTGTGGGT
ATCAACGACA TGGTGATTCC AGATGAGAAA TATTCTCTGG TTGCCGATGC CGAAGCTGAA
GTACTTGAGA TTCAAGAGCA GTTCCAGTCG GGTCTTGTTA CCGCCGGTGA GCGTTACAAC
AAGGTTATCG ATATCTGGGC AAGTGCGAAC GAAAAAGTTT CTAAGGCGAT GATGGATAAC
CTGTCTACCG AGACAGTGAT TAACCGTGAT GGCGAAGAAG AAACTCAAGC TTCGTTCAAC
AGCATCTACA TGATGGCCGA CTCGGGCGCT CGTGGTAGTG CTGCACAGAT TCGTCAGCTA
GCGGGTATGC GTGGTCTGAT GGCGAAGCCA GATGGCTCGA TCATCGAAAC CCCAATTACG
GCGAACTTCC GTGAAGGTCT AAACGTACTC CAGTACTTTA TCTCTACTCA CGGTGCGCGT
AAGGGTCTAG CGGATACCGC ACTTAAGACA GCGAACTCGG GTTACCTGAC TCGTCGTCTG
GTTGACGTTG CACAAGACTT AGTGGTTATC GAAGACGATT GTGGTACACA CGAAGGTCTG
ACAATGAAGC CGCTGATCGA AGGTGGTGAT GTTGTTGAGC CGCTACGTGA GCGTGTACTG
GGTCGTGTGG TAGCTGAAGA TGTTTACTAC CCAGGTACCG AAGATGTACT TGCGCCGCGT
AACACTCTGC TTGATGAAGC ATGGTGTGAC AAGCTGGAAG AACACTCTAT CGACGAAGTT
AAGGTTCGTT CTGTAATTAG CTGTGACACA GATTTCGGTG TGTGTGCGGC GTGTTACGGC
CGTGACCTTG CACGTGGTCA CCTGATTAAC CAAGGTGAAG CGATTGGTGT GGTAGCTGCT
CAGTCAATTG GTGAGCCAGG TACACAGCTG ACGATGCGTA CCTTCCACAT CGGTGGTGCG
GCATCGAGAG CGTCTGCAGA AAACAACGTA CAGGTGAAGA ACGCTGGTAC CGTTAAGCTG
CACAACGCTA AGCATGTTAC CAACAGTGAC GGTAAGCTGG TTATCGTATC GCGTTCATCT
GAAATCGCGA TTATCGATGA GCTGGGTCGT GAGAAAGAGC GTTACAAGGT GCCTTACGGT
ACTGTCCTAG AGAAGCTGGA AGACGCAACG GTTAATGCCG GTGAAGTCAT CGCTAACAGG
GATCCGCACA CTCACCCAAT CGTTTCTGAG GTAGCGGGTA GCATCAAGTT CGTCGACATG
ATCGAAGGTG TCACTATGAC ACGTCAGACC GACGAGCTAA CGGGTCTATC TTCAATCGTG
GTTATGGATG TGGGTCAACG TCCTACTGCG GGTAAAGAGA TGCGTCCGGC GATTCGTCTG
GTTGGTGCCG ATGGCAACGA TCTGATGATC CCTGGTACCG AAGTACCAGC GCAATACTTC
TTGCCTGGTA AGGCGATCGT TAACCAAGAC GATAACGCAC AAATCGCCGT TGGTGATGCG
CTTGCACGTA TTCCGCAAGA ATCATCTAAG ACTCGCGATA TTACCGGTGG TCTGCCACGC
GTTGCTGACT TGTTCGAAGC GCGTAAGCCG AAAGAGCCTG CTATCCTGGC TGAGTACTCA
GGTACTATCT CGTTCGGTAA AGAGACCAAA GGTAAGCGTC GTCTGGTGAT CACACCTGCC
GATGGTGGTA AGCCATACGA GGAGATGATT CCTAAGTGGC GTAACCTGAA CGTGTTCGAA
GGTGAGAAGG TTGAGCGCGG CGAAGTTATC GCCGACGGTC CAGAAGCTGC ACACGACATC
CTGCGTCTGC GTGGTATTCA CAAGGTGGCT AACTACATCG TTAACGAAGT GCAAGACGTT
TACCGTCTGC AAGGCGTGAA GATTAACGAT AAGCACATCG AAGTGATTAT CCGTCAGATG
CTGCGTAAGT GTGAGATCAC CGAAGCCGGT GACAGTGAGT TCCTACCGGG CGAACAGGTT
GAAGTGTCTC GCGTCAAGAT CGCTAACCGC GAACTTGAAG CGCAAGGCAA AGAGCCTGCT
AAGTTCGAGC GTGAACTACT GGGTATCACC AAGGCCTCGT TGGCGACCGA GTCATTTATC
TCGGCGGCAT CGTTCCAGGA AACCACACGC GTATTGACCG AAGCTGCCGT AGGCGGTAAG
AGCGATAAGC TACGTGGCCT GAAAGAGAAC GTGATCGTGG GTCGTCTGAT CCCGGCCGGT
ACAGGTTATG CGTACCACAC CAGCCGTAAC CAGGCTGCAC AGAATGGCCC GGCAGAAGAA
GTGCCGGCAA TCAGTGCCAG TGAAGCAGAG CAAAACCTTG CCGATCTATT GAACCTGGCG
GGCAGCCCTG AATAA
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| Protein sequence | MKDLLKFLKQ QSKTEEFEGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTSLERGQML TEENYLDALE EYGDEFEAKM
GAEAVLELLR AIDLEKEIEE MREELPSINS ETRRKKITKR LKLIEAFYQS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREVPEVWD VLDDVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RSLMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRERING RGEGMAFESV AEVEKAYRTG
VAELHARVKV RITETTIAED GERTESRRIV DTTVGRALLS QVLPKGLSYD LVNQNMGKKQ
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFH FATVSGASVG INDMVIPDEK YSLVADAEAE
VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMDN LSTETVINRD GEEETQASFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL
GRVVAEDVYY PGTEDVLAPR NTLLDEAWCD KLEEHSIDEV KVRSVISCDT DFGVCAACYG
RDLARGHLIN QGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNAGTVKL
HNAKHVTNSD GKLVIVSRSS EIAIIDELGR EKERYKVPYG TVLEKLEDAT VNAGEVIANR
DPHTHPIVSE VAGSIKFVDM IEGVTMTRQT DELTGLSSIV VMDVGQRPTA GKEMRPAIRL
VGADGNDLMI PGTEVPAQYF LPGKAIVNQD DNAQIAVGDA LARIPQESSK TRDITGGLPR
VADLFEARKP KEPAILAEYS GTISFGKETK GKRRLVITPA DGGKPYEEMI PKWRNLNVFE
GEKVERGEVI ADGPEAAHDI LRLRGIHKVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM
LRKCEITEAG DSEFLPGEQV EVSRVKIANR ELEAQGKEPA KFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVGGK SDKLRGLKEN VIVGRLIPAG TGYAYHTSRN QAAQNGPAEE
VPAISASEAE QNLADLLNLA GSPE
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