| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1190 |
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| Symbol | ribH |
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| ID | 4921559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1382662 |
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| End bp | 1383138 |
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| Gene Length | 477 bp |
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| Protein Length | 158 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640162724 |
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| Product | 6,7-dimethyl-8-ribityllumazine synthase |
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| Protein accession | YP_001093319 |
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| Protein GI | 127512122 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0054] Riboflavin synthase beta-chain |
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| TIGRFAM ID | [TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000176643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.904135 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACGTAG TTCAAGGTAA TATCGAGTCG AAAAACGCCA AAGTGGCCAT AGTGGTTTCA
CGTTTTAACA GCTTCGTGGT TGAAAGTCTG CTAGAAGGCG CGGTGGATAC ATTGAAGCGC
TTCGGTCAGG TCGCCGACGA CAACATTACC GTTGTCCGCG TACCGGGTGC CGTAGAGCTG
CCACTGGCAG CCCGTCGTGT GGCGGCAAGT GGTAAATTTG ACGGCATCAT AGCGTTGGGC
GCCGTGATCC GTGGTGGTAC GCCACACTTT GATTTTGTTG CAGGCGAGTG TAACAAGGGG
CTGGCTCAAA TAGCGCTTGA GTTCGACCTT CCTGTGTCAT TCGGTGTATT GACCACAGAT
ACCATTGAAC AAGCTATCGA GCGTTCTGGT ACTAAGGCGG GTAACAAGGG CGGCGAAGCG
GCACTTGGTC TGCTAGAGAT GGTCAATGTT CTGCAAGAAC TAGAACAGCA GTTGTAA
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| Protein sequence | MNVVQGNIES KNAKVAIVVS RFNSFVVESL LEGAVDTLKR FGQVADDNIT VVRVPGAVEL
PLAARRVAAS GKFDGIIALG AVIRGGTPHF DFVAGECNKG LAQIALEFDL PVSFGVLTTD
TIEQAIERSG TKAGNKGGEA ALGLLEMVNV LQELEQQL
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