Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1302 |
Symbol | |
ID | 4920445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1509487 |
End bp | 1511043 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640162843 |
Product | cytochrome bd ubiquinol oxidase, subunit I |
Protein accession | YP_001093431 |
Protein GI | 127512234 |
COG category | [C] Energy production and conversion |
COG ID | [COG1271] Cytochrome bd-type quinol oxidase, subunit 1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000643415 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTGTTG AAGAGGTTGT AGAGCTCTCG CGCTTACAGT TTGCGCTGAC AGCTATGTAT CACTTCCTGT TTGTACCTTT GACCTTGGGG CTGGCGTTCT TGCTGGCCAT TATGGAATCA CTCTATGTGA TGACCAATAA GCAGATCTAT AAAGATATGA CCAAGTTCTG GGGTAAGCTT TTTGGTATTA ACTTCGCCCT GGGCGTAACC ACAGGTCTGG CGATGGAGTT CCAGTTCGGA ACCAACTGGT CATACTATTC TCACTATGTG GGTGACATCT TCGGTGCGCC ACTGGCTATC GAAGGCTTGA TGGCCTTCTT CCTCGAATCT ACCCTGGTGG GTATGTTCTT CTTCGGTTGG GACAGATTCA GCAAGCGTCA ACACCTGGCG GTCACCTGGT TGGTGGCCCT GGGCTCGAAC ATGTCGGCGC TGTGGATCTT GGTCGCCAAC GGTTGGATGC AGAACCCAGT AGGTAGTGTG TTCAACTACG AAACCATGCG TATGGAGATG ACCAGCTTCG CCGAGGTGCT GTTCAACCCG GTTGCCCAGG TGAAGTTTGT TCATACCGTG GCGTCTGGCT ATGTGGCCGG CGCCATGTTT GTTCTGGCCA TCAGTTCTTA CTACATCCTA AAGAAGCGTG ACCTGCCGTT TGCCCGTCGC TCATTTGCCA TCGCGGCAAG CTTCGGTATG GCGTCTATCC TGTCGGTCAT CGTACTGGGT GACGAGTCAG GTTATAAGGT GGGTGAGGCC CAGCGCGTTA AGCTAGCGGC TATCGAAGCC GAATGGCACA CAGAACCTGC ACCTGCGGCC TTTACCGCGG TGGGTTTCCC GAATCAGGAA ACCATGCACA CCGATTACGC CATCAAGATC CCATACGCCA TGGGTATCAT CGCCACCCGT TCTATCGATG AAGAGGTGAC CGGTATCCGC GACCTTATCG TCGAGCACGA GGAGCGTATT CGCAACGGTA TGAAGGCTTA TGCCATGTTG ACCGAGCTGC GCGCCGGCAA GGAAACCCCT GAGCTGCGTG CCGCCTTCGA AGAGGCAAAA GTCGACCTGG GTTATGGCCT GCTGCTGAAG CGTTACACAG ACAATGTGGT CGATGCGACA GAAGAGCAGA TCAAGGCCGC GGCCAAAGAC TCTATCCCAT CGGTTGCCCC TATGTTCTGG AGCTTCCGTG TGATGGTTGG CCTGGGTGTC GTCATGCTGT TCGTGTTTGC GGCGGCCTTC TGGCAGAGCA CACGTCATCA GATCGAAGAG AAGCCTTGGG TACTTAAGGC GGCGCTGTAC AGCCTGCCAC TGCCTTGGAT CGCCATCGAG TGTGGTTGGT TCGTCGCCGA GTACGGTCGT CAGCCTTGGA CCATCTCCGA GGTGCTGCCA ACCTTCATGT CGGCGTCTAG CCTAACGGCT GCGGATCTCT GGTTCAGTAT CATCTCTATC ACGCTCTTCT ATACAGTTCT GCTGGTGATT GAGCTGTTCT TGATGATCAA GTTTGCACGT AAGGGACCTA GCAGTCTCAA GACGGGCCGT TATCACTTTG AAAACCTAGA AGCTTAA
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Protein sequence | MIVEEVVELS RLQFALTAMY HFLFVPLTLG LAFLLAIMES LYVMTNKQIY KDMTKFWGKL FGINFALGVT TGLAMEFQFG TNWSYYSHYV GDIFGAPLAI EGLMAFFLES TLVGMFFFGW DRFSKRQHLA VTWLVALGSN MSALWILVAN GWMQNPVGSV FNYETMRMEM TSFAEVLFNP VAQVKFVHTV ASGYVAGAMF VLAISSYYIL KKRDLPFARR SFAIAASFGM ASILSVIVLG DESGYKVGEA QRVKLAAIEA EWHTEPAPAA FTAVGFPNQE TMHTDYAIKI PYAMGIIATR SIDEEVTGIR DLIVEHEERI RNGMKAYAML TELRAGKETP ELRAAFEEAK VDLGYGLLLK RYTDNVVDAT EEQIKAAAKD SIPSVAPMFW SFRVMVGLGV VMLFVFAAAF WQSTRHQIEE KPWVLKAALY SLPLPWIAIE CGWFVAEYGR QPWTISEVLP TFMSASSLTA ADLWFSIISI TLFYTVLLVI ELFLMIKFAR KGPSSLKTGR YHFENLEA
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