Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0144 |
Symbol | |
ID | 4923981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 160907 |
End bp | 162091 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640161663 |
Product | elongation factor Tu |
Protein accession | YP_001092275 |
Protein GI | 127511078 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0050] GTPases - translation elongation factors |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000195175 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.039031 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAAAG AAAAATTTGA ACGTAGCAAA CCTCACGTAA ACGTGGGCAC CATCGGTCAC GTTGACCATG GTAAAACAAC TCTTACAGCT GCTATCTCTC ACGTACTGAC TAAGACGTAC GGTGGTGAAG CTAAAGATTT CGCACAGATC GATAACGCTC CAGAAGAGCG TGAGCGCGGT ATTACCATCA ATACCTCTCA CATCGAGTAC GACACTCCAA CTCGTCACTA CGCACACGTA GACTGCCCAG GCCACGCTGA CTATGTTAAA AACATGATCA CTGGTGCTGC ACAGATGGAC GGCGCTATCC TAGTAGTAGC TTCTACTGAC GGTCCAATGC CACAGACTCG TGAGCACATC CTGCTTTCTC GTCAGGTAGG TGTACCTTTC ATCATCGTAT TCATGAACAA GTGTGACATG GTTGACGATG AAGAACTGCT AGAACTAGTA GAGATGGAAG TTCGTGAACT GCTATCTGAA TACGACTTCC CAGGTGATGA CCTACCAGTT ATCCAAGGTT CAGCTCTGAA AGCCCTAGAA GGCGAGCCAG AGTGGGAAGC TAAGATCCTA GAACTAGCTG AAGCACTAGA CTCTTACATT CCAGAGCCAG AGCGTGCTAT CGACGGTGCA TTCATTCTGC CAATCGAAGA CGTATTCTCA ATCTCAGGCC GTGGTACTGT AGTAACTGGT CGTGTTGAGC GTGGTATCGT TAAAGTTGGT GACGAAGTAG AAATCGTAGG TATCAAAGAC ACTACTAAGA CTACTTGTAC TGGTGTTGAA ATGTTCCGTA AGCTGCTTGA CGAAGGTCGT GCAGGTGAGA ACTGTGGTGT ACTACTACGT GGTACTAAGC GTGATGAAGT TGAGCGTGGT CAAGTACTGG CTCAGCCTGG TTCAATCACT CCACACACTC AGTTCGAATC AGAAGTATAC GTACTGTCAA AAGAAGAAGG TGGTCGTCAC ACTCCATTCT TCAAGGGCTA CCGTCCACAG TTCTACTTCC GTACAACTGA CGTAACCGGT ACTATCGAGC TGCCAGAAGG CGTTGAAATG GTAATGCCTG GTGACAACAT CAAGATGGTT GTTACCCTGA TCTGCCCAAT CGCGATGGAC GAAGGTCTAC GTTTCGCTAT CCGTGAAGGT GGCCGTACAG TTGGTGCTGG TGTTGTAGCT AAGATCATCG CTTAA
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Protein sequence | MAKEKFERSK PHVNVGTIGH VDHGKTTLTA AISHVLTKTY GGEAKDFAQI DNAPEERERG ITINTSHIEY DTPTRHYAHV DCPGHADYVK NMITGAAQMD GAILVVASTD GPMPQTREHI LLSRQVGVPF IIVFMNKCDM VDDEELLELV EMEVRELLSE YDFPGDDLPV IQGSALKALE GEPEWEAKIL ELAEALDSYI PEPERAIDGA FILPIEDVFS ISGRGTVVTG RVERGIVKVG DEVEIVGIKD TTKTTCTGVE MFRKLLDEGR AGENCGVLLR GTKRDEVERG QVLAQPGSIT PHTQFESEVY VLSKEEGGRH TPFFKGYRPQ FYFRTTDVTG TIELPEGVEM VMPGDNIKMV VTLICPIAMD EGLRFAIREG GRTVGAGVVA KIIA
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