Gene Shew_0144 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0144 
Symbol 
ID4923981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp160907 
End bp162091 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content48% 
IMG OID640161663 
Productelongation factor Tu 
Protein accessionYP_001092275 
Protein GI127511078 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0050] GTPases - translation elongation factors 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000195175 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.039031 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAAAG AAAAATTTGA ACGTAGCAAA CCTCACGTAA ACGTGGGCAC CATCGGTCAC 
GTTGACCATG GTAAAACAAC TCTTACAGCT GCTATCTCTC ACGTACTGAC TAAGACGTAC
GGTGGTGAAG CTAAAGATTT CGCACAGATC GATAACGCTC CAGAAGAGCG TGAGCGCGGT
ATTACCATCA ATACCTCTCA CATCGAGTAC GACACTCCAA CTCGTCACTA CGCACACGTA
GACTGCCCAG GCCACGCTGA CTATGTTAAA AACATGATCA CTGGTGCTGC ACAGATGGAC
GGCGCTATCC TAGTAGTAGC TTCTACTGAC GGTCCAATGC CACAGACTCG TGAGCACATC
CTGCTTTCTC GTCAGGTAGG TGTACCTTTC ATCATCGTAT TCATGAACAA GTGTGACATG
GTTGACGATG AAGAACTGCT AGAACTAGTA GAGATGGAAG TTCGTGAACT GCTATCTGAA
TACGACTTCC CAGGTGATGA CCTACCAGTT ATCCAAGGTT CAGCTCTGAA AGCCCTAGAA
GGCGAGCCAG AGTGGGAAGC TAAGATCCTA GAACTAGCTG AAGCACTAGA CTCTTACATT
CCAGAGCCAG AGCGTGCTAT CGACGGTGCA TTCATTCTGC CAATCGAAGA CGTATTCTCA
ATCTCAGGCC GTGGTACTGT AGTAACTGGT CGTGTTGAGC GTGGTATCGT TAAAGTTGGT
GACGAAGTAG AAATCGTAGG TATCAAAGAC ACTACTAAGA CTACTTGTAC TGGTGTTGAA
ATGTTCCGTA AGCTGCTTGA CGAAGGTCGT GCAGGTGAGA ACTGTGGTGT ACTACTACGT
GGTACTAAGC GTGATGAAGT TGAGCGTGGT CAAGTACTGG CTCAGCCTGG TTCAATCACT
CCACACACTC AGTTCGAATC AGAAGTATAC GTACTGTCAA AAGAAGAAGG TGGTCGTCAC
ACTCCATTCT TCAAGGGCTA CCGTCCACAG TTCTACTTCC GTACAACTGA CGTAACCGGT
ACTATCGAGC TGCCAGAAGG CGTTGAAATG GTAATGCCTG GTGACAACAT CAAGATGGTT
GTTACCCTGA TCTGCCCAAT CGCGATGGAC GAAGGTCTAC GTTTCGCTAT CCGTGAAGGT
GGCCGTACAG TTGGTGCTGG TGTTGTAGCT AAGATCATCG CTTAA
 
Protein sequence
MAKEKFERSK PHVNVGTIGH VDHGKTTLTA AISHVLTKTY GGEAKDFAQI DNAPEERERG 
ITINTSHIEY DTPTRHYAHV DCPGHADYVK NMITGAAQMD GAILVVASTD GPMPQTREHI
LLSRQVGVPF IIVFMNKCDM VDDEELLELV EMEVRELLSE YDFPGDDLPV IQGSALKALE
GEPEWEAKIL ELAEALDSYI PEPERAIDGA FILPIEDVFS ISGRGTVVTG RVERGIVKVG
DEVEIVGIKD TTKTTCTGVE MFRKLLDEGR AGENCGVLLR GTKRDEVERG QVLAQPGSIT
PHTQFESEVY VLSKEEGGRH TPFFKGYRPQ FYFRTTDVTG TIELPEGVEM VMPGDNIKMV
VTLICPIAMD EGLRFAIREG GRTVGAGVVA KIIA