Gene Shew_1735 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1735 
Symbol 
ID4923745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1985370 
End bp1987511 
Gene Length2142 bp 
Protein Length713 aa 
Translation table11 
GC content55% 
IMG OID640163297 
ProductTonB-dependent receptor 
Protein accessionYP_001093861 
Protein GI127512664 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00374581 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTACAT TAAAATCTTA TTCACCCATC GCCCTTGCCG TCGCGGCGGC GTTAACTCAT 
ACCAGCCTGA TGGCGAGCGA TACGCCGCCA GCCAACGACG AGATGGAAGT GATAGTCGTC
ACCTCCGATT TTCGCCAGTC TAGCCTGGAC AAGATGCCCT CTAGCATCAG CGTAATAGAT
CAACAGCAAA TTGAGGACGA GGGCGCCCAG CACTTTGAAG ACGTACTCAA CGGCATTGCC
AATTTTAACT GGTCTGGGGG TAGCTCACGG GCGAAATATT TCCAGATCCG CGGTGTGGGC
GAGCAGGAGG AGTATCAGGG TGCACCTAAC TCTTCGGTTG GCTACATCAT AGACGACATC
GACATGTCGG GCCTTGGGAT GATCTCCAGC ATGTATGATC TGCAGCAGGT CGAGGTGCTT
CGCGGGCCAC AGGGTACACG CTATGGCGCC AACGCCTTAG CCGGTCTCAT CTATCTTAAG
AGTAACGATC CTACCTCGGT ATTCGAGCAT GGCGCCGAGC TGCAACTGGG TGACGATAAC
CTGCGCACCT ATAGCGGCTT CAGCTCTGGC CCATTGACTG ACTCGGGTAA GCTCTTGTAC
CGCGTATCGC TGCAGCAACA TGAGCAGAAC GGCTATCGCG ACAACCTTTA TCTGGGCCGT
GACGACACTA ACGGCAGAGA TGAATTTACA GGCCGCATTA AGCTGCGCTG GTATGCCACT
GACGATCTGG TGGCCGATCT CAGCCTGATG CACGCCGACT TTAACAACGG CTACGATGCC
TGGACATTGG ACAACAACGG TTTCGATACC CTCACAGATG AGCCGGGTGT CGACAAGCAG
CGCACCACGG GTGGCTCGCT TAAGTTGACC TACTCGGGCG CCGACAGCTT CGAGCTGGTC
TCACTAAGCT CAATGGCTCA GAGTGATACG CATCACGGCT ACGACGGTGA CTGGGCCAAC
CCAGAGTTTT GGGCGGCCCG CAGCTGCGAG GGTGAACCTT GTCAATACGA CTACACCTGG
AACAAGCTGG GTGACAGAAC CACGCTGTCT CAGGAGTTTC GTCTAAGCTC CACCGAGGCG
GGACGTATCT TCGATGGCAG CACCGACTGG TTGGTGGGCG TCTATGGTCT GAGACTCACA
GAAGACAACG ACACTCTTGA GATTTATAAC GGCTGGGAAG ACAGACTGCT TGCCGAATAT
GAAGCGACTA ACTTGGCAGT TTTTGCGCAG TTAGACAGCG ACTTAGGCAA TGGCTACGCG
TTGTCAGTGG GTGCCCGTCT GGAGCGCCGC GAGAGCGACT ACAGCGACTC GGACAAAGAT
GCCTTCGATC CCTCTGAGAA CATGTGGGGC GGTCATATTG CCCTGAGCAA GACCCTGAGT
CCTGGCCAAC AGGCCTATGC CCGTATCGCC CGTGGCTATA AGGCGGGTGG CTTTAACATG
TCACTGCCGG TTTCCCTTAG CGATAAAAAG GAGTTCCAGG CAGAGACTCT GTACAACTAT
GAGCTGGGCC TCAAGTCAGA GTGGCTAGAT GGCGACGCGA CCACCCACTT CTCGCTGTTT
TACATGGACA GACGCGATCA GCAGGTCTCC GCCTCACAGC AAAACCCTGA CGAGCCACAG
AAGTTCATCC TCTACGTCGA AAATGCCGGT AGCTCTCACA ACTATGGCGC CGAGCTGGAA
GCCAACTGGT ATGCCACTGA TAATCTTAAG TTATACGGCA CGCTAGGCTG GCTAGAGACC
GCCTACGGCG ATTACGCCTA CCAGGACAAG TACGGTGGAT TGGTGGATCT CACTGGCCGC
GAGCTGGCTC ACTCACCTAA TCTTACCTAT AGCGCGGGCG CGACCTATCG TAGCGATCTG
GGCTGGTTTG CCAACCTGAC CACCAGTGGT AAGAGCGAGT TCTACTACTC AGACAGCAAC
GACTCTAAGT CAGAGCCCTA TACTATCTTC AATGCCCGTG TCGGCTACGA GACAGAGACC
TGGTCGGCTT ACCTTTGGGG ACGCAATCTG TTTGATGAGA AGTATGGCGT GCGCGGCTTC
TATTTCGGTA ACGAGCCGGA TAACGGCTGG GCCGATAAGC AATATATCCG TTATGGCGAC
CCTCGTCAGC TAGGGGTCAC GCTTAACGTC AAGTTTATGT AA
 
Protein sequence
MFTLKSYSPI ALAVAAALTH TSLMASDTPP ANDEMEVIVV TSDFRQSSLD KMPSSISVID 
QQQIEDEGAQ HFEDVLNGIA NFNWSGGSSR AKYFQIRGVG EQEEYQGAPN SSVGYIIDDI
DMSGLGMISS MYDLQQVEVL RGPQGTRYGA NALAGLIYLK SNDPTSVFEH GAELQLGDDN
LRTYSGFSSG PLTDSGKLLY RVSLQQHEQN GYRDNLYLGR DDTNGRDEFT GRIKLRWYAT
DDLVADLSLM HADFNNGYDA WTLDNNGFDT LTDEPGVDKQ RTTGGSLKLT YSGADSFELV
SLSSMAQSDT HHGYDGDWAN PEFWAARSCE GEPCQYDYTW NKLGDRTTLS QEFRLSSTEA
GRIFDGSTDW LVGVYGLRLT EDNDTLEIYN GWEDRLLAEY EATNLAVFAQ LDSDLGNGYA
LSVGARLERR ESDYSDSDKD AFDPSENMWG GHIALSKTLS PGQQAYARIA RGYKAGGFNM
SLPVSLSDKK EFQAETLYNY ELGLKSEWLD GDATTHFSLF YMDRRDQQVS ASQQNPDEPQ
KFILYVENAG SSHNYGAELE ANWYATDNLK LYGTLGWLET AYGDYAYQDK YGGLVDLTGR
ELAHSPNLTY SAGATYRSDL GWFANLTTSG KSEFYYSDSN DSKSEPYTIF NARVGYETET
WSAYLWGRNL FDEKYGVRGF YFGNEPDNGW ADKQYIRYGD PRQLGVTLNV KFM