| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0999 |
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| Symbol | rpsU |
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| ID | 4924337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1157719 |
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| End bp | 1157934 |
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| Gene Length | 216 bp |
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| Protein Length | 71 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640162532 |
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| Product | 30S ribosomal protein S21 |
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| Protein accession | YP_001093129 |
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| Protein GI | 127511932 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0828] Ribosomal protein S21 |
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| TIGRFAM ID | [TIGR00030] ribosomal protein S21 |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000187579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCAATTA TTAAAGTACG TGAGAATGAA CCATTTGACG TAGCTCTACG TCGTTTCAAG
CGCTCTTGTG AAAAAGCTGG TATCCTAGCC GACGTTCGTG CTCGTGAATT CTACGAGAAG
CCAACTACTG CACGTAAGCG CGCTAAAGCT GCTGCAGTTA AGCGTCTTGC TAAGAAGCTT
TCTCGCGAAA ACGCGCGTCG CGTACGTTTA TACTAA
|
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| Protein sequence | MPIIKVRENE PFDVALRRFK RSCEKAGILA DVRAREFYEK PTTARKRAKA AAVKRLAKKL
SRENARRVRL Y
|
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