| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1404 |
|---|
| Symbol | |
|---|
| ID | 4922427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1616643 |
|---|
| End bp | 1617188 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640162945 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_001093532 |
|---|
| Protein GI | 127512335 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00202914 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA TCGATACTAA AATTCCAGAT GTAAAAATCA TTGAGCCAAC AGTATTTGGT
GATGAACGTG GTTTCTTTAT GGAAACATGG AACCAAAAAC GTTTTGAAGA GTTGGTGACA
GGTAAACATA CTCAGTTTGT ACAAGATAAC CACTCTAAAT CTAAAAAAGG AATTTTACGA
GGCTTACATT ACCAAACTGA AAATACTCAA GGGAAGCTAG TTAGAGTTAT TTACGGTGAG
GTATTCGATG TCGCTGTGGA TATTAGAAAA GGTTCACCAA CATTTGGTAA ATGGGTAGGA
GAGTACTTAT CTGCTGAGAA TAATCGACAG TTATGGGTTC CAGAGGGATT TGCACATGGT
TTTTATGTCA CAAGTGAACA TGCTGAGTTT GTATATAAGT GTACAGATTA TTATAACCCT
CATATGGAGT GCTCAATTCA GTGGGACGAT AAGTTTTTGT CAATAGAGTG GCCGTTTGAA
AGCGAGCCAA TTTTGTCTTC TAAAGACTCA AATTGTTTAG GTATGAACGA ACAGGTATTA
TTGTAG
|
|---|
| Protein sequence | MKIIDTKIPD VKIIEPTVFG DERGFFMETW NQKRFEELVT GKHTQFVQDN HSKSKKGILR
GLHYQTENTQ GKLVRVIYGE VFDVAVDIRK GSPTFGKWVG EYLSAENNRQ LWVPEGFAHG
FYVTSEHAEF VYKCTDYYNP HMECSIQWDD KFLSIEWPFE SEPILSSKDS NCLGMNEQVL
L
|
|---|
| |