Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0330 |
Symbol | |
ID | 4922938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 374731 |
End bp | 375699 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640161858 |
Product | nifR3 family TIM-barrel protein |
Protein accession | YP_001092461 |
Protein GI | 127511264 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000590766 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGATTG GACCCTATCA ACTGAAGAAT CAGCTGATCG TGGCTCCTAT GGCAGGAGTC ACCGACCAAC CCTTCCGAAA TCTCTGTTTA CGCTACGGCG CCGCCCTGGC TGTATCAGAG ATGCTTTCGT CCAATCCCGA GGTCTGGGAC ACGGACAAGA GCCGACAGCG CATGGCACAC GCTGGTGAAG ATGGGATTCG CTCAGTACAA ATTGCAGGTG CCGACCCCGA TATGATGGCC CATGCCGCCC TTGTCAACGT ACAACAGGGC GCACAGATCA TCGATATCAA CATGGGGTGT CCTGCAAAAA AAGTGAATAA GAAGTTGGCA GGTTCGGCAC TACTGCAGCA ACCAGAGCTG GTAAAAGCGA TTTTACAGGC TGTCGTTGCC GCTGTGGATG TACCTGTCAC CCTGAAGATT CGCACCGGAT GGGCACCCGA ACACCGAAAT GGGGTTCACA TAGCCCAAAT TGCGCAAGAT TGTGGCATTG CCTCGCTCGC GGTCCATGGC CGTACGCGAC AATGCATGTA CAAAGGCGAC GCCGAGTACG ACACGATTCG TGCGATTAAA CAGAATGTCT CTATTCCAGT TGTCGCAAAT GGCGATATCT GCACCCCGGA GAAGGCACGT TCCGTGCTGG ACTATACGGG CGCAGATGCC GTGATGATAG GAAGAGGCGC TCAAGGACGA CCTTGGCTAT TCAGAGAGAT CCAACATTAC TTGGAAACAG GTAATAAGCT AGCGCCCATT GAAGTGGACG AAAAGCGTCA AGTGATGCTG GAACACCTCA AGAATTTATA TGCATTATAT GGCGAATACA AAGGGTTACG TATCGCCAGA AAGCATGTTG GATGGTATCT GGACCAAGAA GCGCAGAGAT CTTTCAGAGC CGACTTCAAT CGGCTGGAAA CTGTTGAAGA ACAACGTTCC ATGTTGGAGC GTTATTTTGA TGAATTAGTA AAGAATTAA
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Protein sequence | MQIGPYQLKN QLIVAPMAGV TDQPFRNLCL RYGAALAVSE MLSSNPEVWD TDKSRQRMAH AGEDGIRSVQ IAGADPDMMA HAALVNVQQG AQIIDINMGC PAKKVNKKLA GSALLQQPEL VKAILQAVVA AVDVPVTLKI RTGWAPEHRN GVHIAQIAQD CGIASLAVHG RTRQCMYKGD AEYDTIRAIK QNVSIPVVAN GDICTPEKAR SVLDYTGADA VMIGRGAQGR PWLFREIQHY LETGNKLAPI EVDEKRQVML EHLKNLYALY GEYKGLRIAR KHVGWYLDQE AQRSFRADFN RLETVEEQRS MLERYFDELV KN
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