Gene Shew_0330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0330 
Symbol 
ID4922938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp374731 
End bp375699 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content51% 
IMG OID640161858 
ProductnifR3 family TIM-barrel protein 
Protein accessionYP_001092461 
Protein GI127511264 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00737] putative TIM-barrel protein, nifR3 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000590766 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGATTG GACCCTATCA ACTGAAGAAT CAGCTGATCG TGGCTCCTAT GGCAGGAGTC 
ACCGACCAAC CCTTCCGAAA TCTCTGTTTA CGCTACGGCG CCGCCCTGGC TGTATCAGAG
ATGCTTTCGT CCAATCCCGA GGTCTGGGAC ACGGACAAGA GCCGACAGCG CATGGCACAC
GCTGGTGAAG ATGGGATTCG CTCAGTACAA ATTGCAGGTG CCGACCCCGA TATGATGGCC
CATGCCGCCC TTGTCAACGT ACAACAGGGC GCACAGATCA TCGATATCAA CATGGGGTGT
CCTGCAAAAA AAGTGAATAA GAAGTTGGCA GGTTCGGCAC TACTGCAGCA ACCAGAGCTG
GTAAAAGCGA TTTTACAGGC TGTCGTTGCC GCTGTGGATG TACCTGTCAC CCTGAAGATT
CGCACCGGAT GGGCACCCGA ACACCGAAAT GGGGTTCACA TAGCCCAAAT TGCGCAAGAT
TGTGGCATTG CCTCGCTCGC GGTCCATGGC CGTACGCGAC AATGCATGTA CAAAGGCGAC
GCCGAGTACG ACACGATTCG TGCGATTAAA CAGAATGTCT CTATTCCAGT TGTCGCAAAT
GGCGATATCT GCACCCCGGA GAAGGCACGT TCCGTGCTGG ACTATACGGG CGCAGATGCC
GTGATGATAG GAAGAGGCGC TCAAGGACGA CCTTGGCTAT TCAGAGAGAT CCAACATTAC
TTGGAAACAG GTAATAAGCT AGCGCCCATT GAAGTGGACG AAAAGCGTCA AGTGATGCTG
GAACACCTCA AGAATTTATA TGCATTATAT GGCGAATACA AAGGGTTACG TATCGCCAGA
AAGCATGTTG GATGGTATCT GGACCAAGAA GCGCAGAGAT CTTTCAGAGC CGACTTCAAT
CGGCTGGAAA CTGTTGAAGA ACAACGTTCC ATGTTGGAGC GTTATTTTGA TGAATTAGTA
AAGAATTAA
 
Protein sequence
MQIGPYQLKN QLIVAPMAGV TDQPFRNLCL RYGAALAVSE MLSSNPEVWD TDKSRQRMAH 
AGEDGIRSVQ IAGADPDMMA HAALVNVQQG AQIIDINMGC PAKKVNKKLA GSALLQQPEL
VKAILQAVVA AVDVPVTLKI RTGWAPEHRN GVHIAQIAQD CGIASLAVHG RTRQCMYKGD
AEYDTIRAIK QNVSIPVVAN GDICTPEKAR SVLDYTGADA VMIGRGAQGR PWLFREIQHY
LETGNKLAPI EVDEKRQVML EHLKNLYALY GEYKGLRIAR KHVGWYLDQE AQRSFRADFN
RLETVEEQRS MLERYFDELV KN