| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1688 |
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| Symbol | |
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| ID | 4920433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1940184 |
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| End bp | 1942316 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163250 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001093814 |
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| Protein GI | 127512617 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00738992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0180451 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCTC ACCTTCCTTT AAAGAGATCA CCTTTGGCCC TCTACACCAG CCTCTTCTGT
CTTGGGCTGA TGAGTCAAAC GGCCGTTGCC GCCGATGCCA GCATAGAACG CATTATTGTC
ACGGGTAGCC GCAGCGCCGA GAGCATCGAG GAGGTGCCCT CCTCGGTGAC CCTGATCGAC
AACAAGACCC TGGCGCAGGA TATGTTGATC ACCTCTGAAC TGCAGAACAT GCTGGCGTTT
CGCGTGCCGG GCATGGCCCC CAGTACAGGC ACCTCGAGTA ATGCCGGTCA AACACTGCGT
GGGCGTAAGG CGCTGGTGAT GATCGACGGC GTACCTCAGT CTACCCCACT GAGAAACGGC
AGCCTGGGCA TTCGCTCTAT CGATCCCAGC GCGATTGAGC GTATCGAGGT GATCAAGGGT
GCAACCTCCA TCTATGGCAA CGGCGCCTCG GGCGGGATCA TCAACTACAT CACCAAGACC
CCAAGCAGCG ATGCCAAGGC CAGCGTTGAG CTGGGCGCCT CGAGTAAATT CAGTGCGGTC
AAATTTGAAG ACAGCGCAGG TTACCGCTAC CACGCCAGCG TGGATGGCAC CCTAGATAAG
TTCAGCTATG TGGTCAGCGC CGCCGAGGAG GAGACAGGGC TCGAATATGA CGCCGAGGGC
GATATCATTG GCTTGATCTA CGGCCTGTCG GAAACCAAGT CGCAAAACCT ATTCACTAAG
CTTGCCTATG AGTTTGACAG CGAGAAGCAG GTGCAGCTGA CCTACAACTA CTATGAGGCG
CAGCAAAACG CCGATCTCAT GGATGTTACC GGCAGCGTCA ACAGCGGCGA GAAAACCTAC
GCCATCAAGA GCAGCGAGCC TAAGCCGGGC GTACCACAGG GGCCGCGAGG CAACCACAAC
CTGATGCTGA AATACACAGA TCAGGAGATC TTCAACCAGA CCCAGCTCAC CTTGGACGCC
TACTACCAGA AGATCGAAAA CATGTTCTTT TACTCTGCTG CGCTAGCCAA CCCCAGCGAA
GGCTATGATG GCGGCCAATC GCTGATCCGC TCAGAGAAGC GCGGCCTGCG AGTCAACCTC
AACAGCTACG CCGACTGGGA CAATGTGTCG GCCAGCTTCA TCTATGGTAT CGATGCCCTG
AACGATGTCA GCTCACAGCC GCTAAACGAT GGCCGCATCT GGGTGCCCGA GATGGACATG
AGCAACCTGG CGGGTTATCT ACAAACCAAG TTGACCATTC ATGATGACTG GATTGTCAAA
GCAGGCGTGC GCCACGACAG AGTCGATATC GCCATAGACG ATTACAAGAC CCTCAAGGTG
TGCCGCAGCG CCGACACCTG CTCTGTGCCC TTCGACGTTA AGGGCGGCGA GCTTAACTTC
ACCTCCACCA CCTATAACCT GGGCCTGCGC TATCAGCTAG CCGACGCCTT CAGCCCGTTT
GCCAGCTTCT CACAGGGGGC GGACATCTCA GATCTTGGCC GCCTGCTGCG TACTGCCACG
GTGAATGATA TCTCGCTGAT CCAGACAGAG GCGTCGATCG TCGACAACTA TGAGGTAGGC
TTCTCGGGCC ATTACGACAA GCTAAGCTAT GAGCTGGCGG CGTATCGCAG CACCTCAGAG
CTAGGCACCA GCAACGCCTA TGACGCCGCG ACCGGGGTTT ACATGCCGGT GCGCGCACCG
CAGAAGATCT GGGGCTATGA GGCGCAGCTG GCCTACCAAT GGCTGGATAA TCTGGCCACA
GACATCAGCT ACAGCTGGGT CGAGGGTAAG GACACGGAGA AAGATATCTA CCTGGATGGC
CAGGTGATCT CGGCGCCTAA GTTTACCGCC TCTATCAACT GGCAGCCGAT CGACGATGCG
AACATCGCCA TCAACTACCT GTATGTGGGC GATCGTAAGC GCTTCGAGAC GGTCGATGGT
CAGTATGTGG GCGCCCAGGG GCCGGTGAAT CACTACAACC TAGTGAATCT CAGCAGCAGC
TATCAATTGG ATAACTGGCA GTTCAGCCTA GGGGTCGAGA ACCTGTTGAA TGAAGATTAC
TACTCGGCGC GTTCGCAGGC CTTTACCTAT GCGGGCTACA ACACCAAGGG CCTTGGCACC
ACCATCAACC TTGGCGTGAA GACACGTTTC TAA
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| Protein sequence | MPAHLPLKRS PLALYTSLFC LGLMSQTAVA ADASIERIIV TGSRSAESIE EVPSSVTLID
NKTLAQDMLI TSELQNMLAF RVPGMAPSTG TSSNAGQTLR GRKALVMIDG VPQSTPLRNG
SLGIRSIDPS AIERIEVIKG ATSIYGNGAS GGIINYITKT PSSDAKASVE LGASSKFSAV
KFEDSAGYRY HASVDGTLDK FSYVVSAAEE ETGLEYDAEG DIIGLIYGLS ETKSQNLFTK
LAYEFDSEKQ VQLTYNYYEA QQNADLMDVT GSVNSGEKTY AIKSSEPKPG VPQGPRGNHN
LMLKYTDQEI FNQTQLTLDA YYQKIENMFF YSAALANPSE GYDGGQSLIR SEKRGLRVNL
NSYADWDNVS ASFIYGIDAL NDVSSQPLND GRIWVPEMDM SNLAGYLQTK LTIHDDWIVK
AGVRHDRVDI AIDDYKTLKV CRSADTCSVP FDVKGGELNF TSTTYNLGLR YQLADAFSPF
ASFSQGADIS DLGRLLRTAT VNDISLIQTE ASIVDNYEVG FSGHYDKLSY ELAAYRSTSE
LGTSNAYDAA TGVYMPVRAP QKIWGYEAQL AYQWLDNLAT DISYSWVEGK DTEKDIYLDG
QVISAPKFTA SINWQPIDDA NIAINYLYVG DRKRFETVDG QYVGAQGPVN HYNLVNLSSS
YQLDNWQFSL GVENLLNEDY YSARSQAFTY AGYNTKGLGT TINLGVKTRF
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