| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1112 |
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| Symbol | |
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| ID | 4924322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1281505 |
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| End bp | 1284129 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640162645 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001093242 |
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| Protein GI | 127512045 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00179427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACCAT CTACTTTTAA GAAAAGTGTA CTAGCTACAA ATATTGCGCT GCTGCTGAGC
GGTGCAGTGT CTGTTTCTGC TCTAGCGGCA GAGGCCGATG CAGAAGCGGT TAATACTGAT
AATATTGAAA AAATTGAAGT ACGTGGTCTG CGTGCTTCGA TGAAGGCGTC AATTAACGCC
AAAAGATTTT CTGATGCCGT TGTCGATGCC GTTACAGCCG AAGACATTGG TAAATTCCCC
GATGGCGACG TAGGTGAGTC ACTGGGTCGT ATTCCTGGTG TTACCGTTAA CCGCCAGTTT
GGTCAAGGCC AGCAGGTGTC GATTCGCGGC GCATCTGCTC AGCTAACCCG CACCCTGTTA
AATGGTCACT CGGTTGCTTC GACCGGTTGG TTTGACCAAC AGGCTATCGA CCGTAGCTTT
AACTATTCTC TGCTGCCACC CGAGATGATC AGTGGCATCG AAGTCTATAA GTCTTCTCAG
GCCGACATCA CAGAAGGTGG TATTGGTGGT ACCGTGGTTG TTAAGACCCG TAAGCCGCTG
GACTTAGATG CCAATACTCT ATTCTTAAGC GCCAAGGGCG ATTATGGTAC TGTCTCTGAG
GCGACAGATC CTGCTGTCTC TGGCTTGTAT AGTTGGGCAA ACGAGGCCGA AACCTTCGGT
GTTCTGGTTT CTGCTGCGGG CTCTCAAACC GACTATCAGC GTAACGGTAT CGAAACCTTG
TTGGGTTGGG GCGAAATTGT GCCGACAACC TTCCAACAAG ATCGTGAGCG TACCGCCTAC
AACATTGCCG CTCAGTATCG TCCAACCGAC AACTTAGAGT TCGGCCTAAC GGTTACTAGC
CTGGATCTTA AGGCAAACAA CGCCAACACC TCTATCTTCC TCTTCCCTAC ACAACAAGGC
GTAAGCACTT GTAACAAAAC CAATGCTGCG GGTGTTTGTA CCGACATTAC CCATACGGGC
GAGGGTGGAT TTGCCTGGGC ACAGACTTGG GCTCGTGAAG CCGAGATGTC GTCAGATACC
TATGACCTGG ACTTCAAATA TGAGGGTGAA GGTTTCACCC TTGAAGGCCG CGTCGGTAAC
ACCAAGGCAG ATGGTGGTAC TAGCCTAACC TCTAACTATG GTAACTCTAT CGGTCAGCCT
GGTGACTTCG CCGGTCACTA TGACGCTACC GGTGAAAAGA TCATTATCGA CATCGCTAAC
AAGTCTTTCG ATGCGGGCGA CTTTAACGGT CAGCTAGAAA CTGCTGGTTG GGCACTGAAG
AAGCAGCCTA ACACCGACGA AGAGACCTAT GCTCAGTTCG ACCTGACCTT CCTGGTTGAT
TTCGGTGCCA TCACCTCGAT CAAAGCCGGT GTGCGCTATG CAGACCATGA CGTGACACAG
CAAACTGACG CGGCAATCGT GGGTGACATT GTGGCTAAAG ATGCCTCTGA ATACTACTCT
GGCACCATCT CATCTGGCGC AGGTTTTACC CTGCCTAAGC CGAATTTCGA TGCCATGATC
CGTGACGCTA AAGCCTCAGT TGATGGCTTT ACCCGCGATA AGTCTGGTTA CGGTACCCTG
AATGAGAAGA ACCTGGCCGC CTACGCCATG GCTAACTTCG AGGCGGAAGG GATCCGCGGT
AACTTTGGTT TACGTTTCAT CTCGACTGAT ATCGAGTCTG ATTACTATGC GCTGAGTTCA
AGCGGTCAGT TCGCCGATGA GTTGAGCACA GACAAGTCGA GCTACAGTGA CGTATTGCCA
AGCATCAACG TGACGTTCGA CTTAGCACCG GATCTCTTGC TACGTACCAC GGCGGCTCAG
GTGATGTCTC GTCCTAACTA CGCAGACTTG TTTGCCACTT CGACTCTTCC TGGTCTGAAC
GATGGCACGC CAGGCAACGA AAAACTCAAC CGCGGTTCTG TTGCCCTGGA GCCATTTAAG
GCGACCCAGG CAGATGTGAG CCTAGAATGG TACTTCGGCG GTGAGGGTCT GGCTTCTTTG
ACCTACTTCA TCAAAGACGT GAGCTCTTTC ATTACCACTC GTCAGAAGCT AAACCAGCAG
ATTGGCATCG AAGACGATAA CCTCAGAGAT CAAGGCTACA GCGCCTGTGG TGTAGGCGTC
TATGACTGCT GGACAGTCAG CGAGAAGTAC AATGCTAACG GTGGTCATAT AGAAGGAATT
GAGTTACAGC TACAAGACTC GTTCGAAAAC GGCCTGGGCT ACTCGGTTAA CTATACCTTC
GCCGATGCAG GCTCTCCAGC CGAGAACTAC CCAGATAAAG TGGGTGTATT CTCTGACTCT
TCTAAGCACA CGGTTAACCT TGTGGGCTAC TATGAGATGG AAAGCTTCTC TGCGCGTCTG
GCCTACAACT GGCGCAGCGA ATACATGATG CGTGAGCTAC CAGGTTTCTA TGGTAACCGT
CAGCACCAAG ACTATGGCTC GCTGGATCTG AGCATGAACT ACAGCGTGAC CGATTGGATG
GATCTGACCT TCGAAGCCGT TAACCTCACA GAGGAAGACA GCATTCAGAT CGGTGTCTCG
CCAGTCGACA ATCCAGATGT GATCGCCGAG TTTAAAGATA ACTACCCAGT ATGGAGCTTC
GAAGGCGAAG CGAGATACAA GGTGGGTGTC GCACTGCGAT TCTAA
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| Protein sequence | MRPSTFKKSV LATNIALLLS GAVSVSALAA EADAEAVNTD NIEKIEVRGL RASMKASINA
KRFSDAVVDA VTAEDIGKFP DGDVGESLGR IPGVTVNRQF GQGQQVSIRG ASAQLTRTLL
NGHSVASTGW FDQQAIDRSF NYSLLPPEMI SGIEVYKSSQ ADITEGGIGG TVVVKTRKPL
DLDANTLFLS AKGDYGTVSE ATDPAVSGLY SWANEAETFG VLVSAAGSQT DYQRNGIETL
LGWGEIVPTT FQQDRERTAY NIAAQYRPTD NLEFGLTVTS LDLKANNANT SIFLFPTQQG
VSTCNKTNAA GVCTDITHTG EGGFAWAQTW AREAEMSSDT YDLDFKYEGE GFTLEGRVGN
TKADGGTSLT SNYGNSIGQP GDFAGHYDAT GEKIIIDIAN KSFDAGDFNG QLETAGWALK
KQPNTDEETY AQFDLTFLVD FGAITSIKAG VRYADHDVTQ QTDAAIVGDI VAKDASEYYS
GTISSGAGFT LPKPNFDAMI RDAKASVDGF TRDKSGYGTL NEKNLAAYAM ANFEAEGIRG
NFGLRFISTD IESDYYALSS SGQFADELST DKSSYSDVLP SINVTFDLAP DLLLRTTAAQ
VMSRPNYADL FATSTLPGLN DGTPGNEKLN RGSVALEPFK ATQADVSLEW YFGGEGLASL
TYFIKDVSSF ITTRQKLNQQ IGIEDDNLRD QGYSACGVGV YDCWTVSEKY NANGGHIEGI
ELQLQDSFEN GLGYSVNYTF ADAGSPAENY PDKVGVFSDS SKHTVNLVGY YEMESFSARL
AYNWRSEYMM RELPGFYGNR QHQDYGSLDL SMNYSVTDWM DLTFEAVNLT EEDSIQIGVS
PVDNPDVIAE FKDNYPVWSF EGEARYKVGV ALRF
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