| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0729 |
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| Symbol | |
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| ID | 4920569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 830300 |
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| End bp | 832000 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162262 |
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| Product | FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
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| Protein accession | YP_001092860 |
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| Protein GI | 127511663 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0446] Uncharacterized NAD(FAD)-dependent dehydrogenases
[COG0607] Rhodanese-related sulfurtransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000675699 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGA TACTGATTAT TGGTGGCGTC GCGGGCGGCG CATCGGCGGC GGCAAGGGCG
CGTAGACTCA GCGAAACTGC TGAAATCATT ATGTTTGAGC GCGGCGAATA TGTCTCCTTT
GCCAACTGTG GCCTGCCTTA TCATATCAGT GGTGAGATCG CTCAGCGCAG CGCCTTAGTA
CTGCAGACGC CAGAGAGCTT CAAGGCCAGA TTCAATGTCG AGGTGCGGGT TAAGCATGAG
GTGGTCGCCA TAGATCGCGC CGCCAAGTTG GTGACCGTCA GACGACTGCT CGATGGCAGC
GAATACCAGG AAAGCTATGA CACCCTGCTG CTCAGCCCTG GCGCGGCACC TATCGTGCCG
CCGATCCCGG GTGTGGATAA TCCGCTCACC CACTCCCTGC GCAATATTCC CGACATGGAT
AGGATCCTGC AGACTATCCA GATGAACAAT GTCGAGCATG CCACTGTGGT TGGCGGCGGC
TTTATCGGCC TGGAGATGAT GGAGTCACTG CATCATCTGG GGATCAAGAC CACTTTGCTT
GAGCTTGCCG ATCAGGTGAT GACTCCTGTG GATCGCGAGA TGGCGGGCTT TGCTCATCAG
GCGATTCGTG ACCAGGGCGT AGATCTGCGT CTGGGCACGG CCCTGTCAGA GGTGAGCTAT
CAGGTGCAGA CCCATGTGGC CAGTGACGCC GCCGGTGAAG ACACCGCCCA TCAACACATC
AAGGGACATC TGAGTCTGAC CCTGAGTAAC GGCGAGCTGC TGGAGACAGA TCTCTTAATC
ATGGCCATCG GCGTGCGCCC CGAGACTCAG CTGGCCCGCG ATGCTGGGTT AGCGATTGGC
GAGCTTGGTG GCATCAAGGT CAACGCCATG ATGCAGACCA GCGATCCCGC CATCTACGCC
GTGGGTGACG CCGTCGAAGA GCAAGACTTT GTGACCGGCC AGGCCTGTTT GGTGCCGCTG
GCGGGCCCGG CGAACCGTCA GGGCCGTATG GCGGCCGACA ACATGTTTGG CCGCGAGGAG
CGGTATCAGG GCACCCAAGG TACGGCGATC TGTAAGGTGT TCGATCTCGC GGTGGGTGCT
ACGGGCAAGA ATGAGAAGCA GCTCAAACAG GCGGGTATCG CTTTTGAGAA GGTGTATGTG
CATACCGCCA GCCACGCCAG CTACTATCCC GGCGCCGAGG TGGTCTCCTT CAAGCTGCTG
TTCGACCCGG TTAAGGGCAC CATCTTTGGC GCTCAGGCCG TGGGTAAGGA TGGTATCGAC
AAGCGTATCG ATGTGATGGC GGTGGCCCAG CGCGCCGGCA TGACGGTCGA GCAGCTACAG
CACCTGGAGC TTAGCTACGC GCCGCCCTAT GGCAGTGCCA AAGATGTGAT CAATCAGGCG
GCCTTCGTGG CCAGCAACAT CATCAAGGGC GATGCAACGC CGATCCATTT CGACCAGATA
GATAATCTCA GCGAAGATCA GCTGCTGCTG GATGTGCGTA ACCCTGGCGA GCTGCAGAAT
GGCGGCCTGG AAGGCGCGGT TAATATTCCT GTGGATGAGC TGCGCGATCG CATGCATGAG
CTGCCAAAAG ATAAGGAGAT CATCATCTTC TGTCAGGTGG GTCTGCGGGG CAACGTGGCC
TATCGTCAGC TGGTCAACAA TGGCTACCGT GCCCGCAACC TGATCGGCGG CTACCGCACC
TACAAGTTCG CCAGCGTGTA A
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| Protein sequence | MKKILIIGGV AGGASAAARA RRLSETAEII MFERGEYVSF ANCGLPYHIS GEIAQRSALV
LQTPESFKAR FNVEVRVKHE VVAIDRAAKL VTVRRLLDGS EYQESYDTLL LSPGAAPIVP
PIPGVDNPLT HSLRNIPDMD RILQTIQMNN VEHATVVGGG FIGLEMMESL HHLGIKTTLL
ELADQVMTPV DREMAGFAHQ AIRDQGVDLR LGTALSEVSY QVQTHVASDA AGEDTAHQHI
KGHLSLTLSN GELLETDLLI MAIGVRPETQ LARDAGLAIG ELGGIKVNAM MQTSDPAIYA
VGDAVEEQDF VTGQACLVPL AGPANRQGRM AADNMFGREE RYQGTQGTAI CKVFDLAVGA
TGKNEKQLKQ AGIAFEKVYV HTASHASYYP GAEVVSFKLL FDPVKGTIFG AQAVGKDGID
KRIDVMAVAQ RAGMTVEQLQ HLELSYAPPY GSAKDVINQA AFVASNIIKG DATPIHFDQI
DNLSEDQLLL DVRNPGELQN GGLEGAVNIP VDELRDRMHE LPKDKEIIIF CQVGLRGNVA
YRQLVNNGYR ARNLIGGYRT YKFASV
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