Gene Shew_1204 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1204 
SymbolpyrG 
ID4922154 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1398573 
End bp1400210 
Gene Length1638 bp 
Protein Length545 aa 
Translation table11 
GC content52% 
IMG OID640162738 
ProductCTP synthetase 
Protein accessionYP_001093333 
Protein GI127512136 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0504] CTP synthase (UTP-ammonia lyase) 
TIGRFAM ID[TIGR00337] CTP synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000204322 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTACAA GGTATATCTT CGTTACTGGT GGCGTGGTTT CATCACTAGG TAAAGGCATT 
GCAGCAGCAT CATTGGCGGC AATTTTAGAG GCTCGGGGCC TTAACGTAAC CATTATGAAG
CTGGATCCTT ATATTAACTT GGATCCGGGT ACCATGAGCC CAACCCAGCA CGGTGAAGTA
TTCGTCACCG AAGATGGCGC TGAAACTGAC CTCGACCTGG GTCACTACGA ACGTTTCATC
CGTACCAAGA TGAACCGTCG TAACAACTTC ACTACGGGTC GTATCTATGA GGAAGTGCTG
CGCAAAGAGC GTCGTGGCGA CTACCTAGGG GCCACCATTC AGGTGATCCC ACACATTACT
AATGCGATTA AAGAGAAAGT GCTTGAGGGC GGAGAAGGGC ACGACGTGGC GATCGTTGAG
ATCGGCGGTA CCGTTGGTGA TATCGAGTCA TTGCCTTTCC TTGAGTCTAT TCGTCAGTTG
GGCGTAGAAC TTGGCCGTGA TCGTACCCTG TTTATGCATT TGACCCTGGT GCCTTTCCTG
GGCGCGGCGG GCGAAGTGAA GACCAAGCCG ACACAACACT CGGTGAAAGA GCTGCGTTCA
ATCGGTATCG CGCCAGACGT ACTGGTTTGC CGTGGTGACC GTGCGATTCC GTCTAACGAG
AAGGCGAAGA TCTCGCTATT CTGTAACGTT GAAGAGCGCG CCGTGATCTC GCTGAAAGAT
GTCGATAGCA TCTACAAGAT CCCGGCACTG CTGAAGGCGC AAGGCCTAGA CGATCTGGTC
ACCAAGCGTT TCGGCCTTGA GTGTAGAGAA GCCGATCTGT CTGAGTGGGA AAATGTTATC
TATCAAGAAG CCAACCCAAC CGGTGAAGTC ACTATCGGTA TGGTGGGCAA GTACACCGAA
CTGCCAGATG CATACAAGTC GGTGAACGAA GCGCTGAAGC ATGCCGGCCT GTTTAACCGC
GTGTCGGTCA ACATCAAGTA TATCGATTCA CAAAACATCG AAGCCAAGGG CACAGAAGTG
CTGGAAGGTC TTGACGGTAT CCTGGTACCG GGCGGTTTCG GTGAGCGCGG CGTCGAAGGT
AAGATCATGG CGGCCCAGTA TGCCCGTGAG AACAACCTAC CTTATTTCGG TATCTGTCTG
GGTATGCAGG TTGCACTGAT CGAGTTTGCG CGCCACGTGG CTGGTTTAGA AAATGCGCAT
TCAACAGAGT TCAACAAAGA CACGCCGCAT CCAGTTGTGG GCTTGATCAC AGAATGGATT
GACGAAAAAG GTAATATCGA GCAACGTCAT GAAGAATCAG ATCTCGGTGG CACCATGCGC
CTAGGCGCGC AGCTGTGTCA TCTGATCGAA GGTACTAAGG CGGCAGAAGC CTACAAGGGA
CTGACCTGTG TAGAGCGTCA CCGTCACCGT TACGAAGTGA ACAACACATA CAGAGAACGT
TTAGAGAAAG CCGGCTTGGT ATTCAGCGGT CTGTCGACAG ATCGTCAGCT GGTTGAAATG
ATTGAACTCC CTAACCACCC ATGGTTCGTG GCGGGTCAGT TCCACCCTGA ATTTACATCA
ACGCCTCGCG ATGGTCAGCC ATTGTTCCAA GGTTTCGTTG CTGCAGCCGT TGCGTACCAA
AAACGCGATT TAGGCTAA
 
Protein sequence
MTTRYIFVTG GVVSSLGKGI AAASLAAILE ARGLNVTIMK LDPYINLDPG TMSPTQHGEV 
FVTEDGAETD LDLGHYERFI RTKMNRRNNF TTGRIYEEVL RKERRGDYLG ATIQVIPHIT
NAIKEKVLEG GEGHDVAIVE IGGTVGDIES LPFLESIRQL GVELGRDRTL FMHLTLVPFL
GAAGEVKTKP TQHSVKELRS IGIAPDVLVC RGDRAIPSNE KAKISLFCNV EERAVISLKD
VDSIYKIPAL LKAQGLDDLV TKRFGLECRE ADLSEWENVI YQEANPTGEV TIGMVGKYTE
LPDAYKSVNE ALKHAGLFNR VSVNIKYIDS QNIEAKGTEV LEGLDGILVP GGFGERGVEG
KIMAAQYARE NNLPYFGICL GMQVALIEFA RHVAGLENAH STEFNKDTPH PVVGLITEWI
DEKGNIEQRH EESDLGGTMR LGAQLCHLIE GTKAAEAYKG LTCVERHRHR YEVNNTYRER
LEKAGLVFSG LSTDRQLVEM IELPNHPWFV AGQFHPEFTS TPRDGQPLFQ GFVAAAVAYQ
KRDLG