| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1204 |
|---|
| Symbol | pyrG |
|---|
| ID | 4922154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1398573 |
|---|
| End bp | 1400210 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640162738 |
|---|
| Product | CTP synthetase |
|---|
| Protein accession | YP_001093333 |
|---|
| Protein GI | 127512136 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0504] CTP synthase (UTP-ammonia lyase) |
|---|
| TIGRFAM ID | [TIGR00337] CTP synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000204322 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACAA GGTATATCTT CGTTACTGGT GGCGTGGTTT CATCACTAGG TAAAGGCATT
GCAGCAGCAT CATTGGCGGC AATTTTAGAG GCTCGGGGCC TTAACGTAAC CATTATGAAG
CTGGATCCTT ATATTAACTT GGATCCGGGT ACCATGAGCC CAACCCAGCA CGGTGAAGTA
TTCGTCACCG AAGATGGCGC TGAAACTGAC CTCGACCTGG GTCACTACGA ACGTTTCATC
CGTACCAAGA TGAACCGTCG TAACAACTTC ACTACGGGTC GTATCTATGA GGAAGTGCTG
CGCAAAGAGC GTCGTGGCGA CTACCTAGGG GCCACCATTC AGGTGATCCC ACACATTACT
AATGCGATTA AAGAGAAAGT GCTTGAGGGC GGAGAAGGGC ACGACGTGGC GATCGTTGAG
ATCGGCGGTA CCGTTGGTGA TATCGAGTCA TTGCCTTTCC TTGAGTCTAT TCGTCAGTTG
GGCGTAGAAC TTGGCCGTGA TCGTACCCTG TTTATGCATT TGACCCTGGT GCCTTTCCTG
GGCGCGGCGG GCGAAGTGAA GACCAAGCCG ACACAACACT CGGTGAAAGA GCTGCGTTCA
ATCGGTATCG CGCCAGACGT ACTGGTTTGC CGTGGTGACC GTGCGATTCC GTCTAACGAG
AAGGCGAAGA TCTCGCTATT CTGTAACGTT GAAGAGCGCG CCGTGATCTC GCTGAAAGAT
GTCGATAGCA TCTACAAGAT CCCGGCACTG CTGAAGGCGC AAGGCCTAGA CGATCTGGTC
ACCAAGCGTT TCGGCCTTGA GTGTAGAGAA GCCGATCTGT CTGAGTGGGA AAATGTTATC
TATCAAGAAG CCAACCCAAC CGGTGAAGTC ACTATCGGTA TGGTGGGCAA GTACACCGAA
CTGCCAGATG CATACAAGTC GGTGAACGAA GCGCTGAAGC ATGCCGGCCT GTTTAACCGC
GTGTCGGTCA ACATCAAGTA TATCGATTCA CAAAACATCG AAGCCAAGGG CACAGAAGTG
CTGGAAGGTC TTGACGGTAT CCTGGTACCG GGCGGTTTCG GTGAGCGCGG CGTCGAAGGT
AAGATCATGG CGGCCCAGTA TGCCCGTGAG AACAACCTAC CTTATTTCGG TATCTGTCTG
GGTATGCAGG TTGCACTGAT CGAGTTTGCG CGCCACGTGG CTGGTTTAGA AAATGCGCAT
TCAACAGAGT TCAACAAAGA CACGCCGCAT CCAGTTGTGG GCTTGATCAC AGAATGGATT
GACGAAAAAG GTAATATCGA GCAACGTCAT GAAGAATCAG ATCTCGGTGG CACCATGCGC
CTAGGCGCGC AGCTGTGTCA TCTGATCGAA GGTACTAAGG CGGCAGAAGC CTACAAGGGA
CTGACCTGTG TAGAGCGTCA CCGTCACCGT TACGAAGTGA ACAACACATA CAGAGAACGT
TTAGAGAAAG CCGGCTTGGT ATTCAGCGGT CTGTCGACAG ATCGTCAGCT GGTTGAAATG
ATTGAACTCC CTAACCACCC ATGGTTCGTG GCGGGTCAGT TCCACCCTGA ATTTACATCA
ACGCCTCGCG ATGGTCAGCC ATTGTTCCAA GGTTTCGTTG CTGCAGCCGT TGCGTACCAA
AAACGCGATT TAGGCTAA
|
|---|
| Protein sequence | MTTRYIFVTG GVVSSLGKGI AAASLAAILE ARGLNVTIMK LDPYINLDPG TMSPTQHGEV
FVTEDGAETD LDLGHYERFI RTKMNRRNNF TTGRIYEEVL RKERRGDYLG ATIQVIPHIT
NAIKEKVLEG GEGHDVAIVE IGGTVGDIES LPFLESIRQL GVELGRDRTL FMHLTLVPFL
GAAGEVKTKP TQHSVKELRS IGIAPDVLVC RGDRAIPSNE KAKISLFCNV EERAVISLKD
VDSIYKIPAL LKAQGLDDLV TKRFGLECRE ADLSEWENVI YQEANPTGEV TIGMVGKYTE
LPDAYKSVNE ALKHAGLFNR VSVNIKYIDS QNIEAKGTEV LEGLDGILVP GGFGERGVEG
KIMAAQYARE NNLPYFGICL GMQVALIEFA RHVAGLENAH STEFNKDTPH PVVGLITEWI
DEKGNIEQRH EESDLGGTMR LGAQLCHLIE GTKAAEAYKG LTCVERHRHR YEVNNTYRER
LEKAGLVFSG LSTDRQLVEM IELPNHPWFV AGQFHPEFTS TPRDGQPLFQ GFVAAAVAYQ
KRDLG
|
|---|
| |