| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1406 |
|---|
| Symbol | |
|---|
| ID | 4922976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1618274 |
|---|
| End bp | 1619782 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640162947 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001093534 |
|---|
| Protein GI | 127512337 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00286894 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA AAATCATCGT CAATACATTG GCGTTATATT CACGTCAGGC GTTAGTTGTT
TTAATAAATT TGTATGTTGT AAGGATCGTT TTAAATGAAC TGGGAGTGTC AGATTATGGT
GTTTATAATG TAATATTAGG GGTTACAGCA ATATTCTCCT TTATTCCTAG TGCTATGACT
GTTTCAGTGC AACGGCAATT TGTTTTTTCT ATAGAAAAAG GTAGGGAAAG TTTAAAGCGA
TGTTTTTCTT CCTGCTTAGT AATATATTTA TTAATGATAG CTCTTTCTTC GATGTTGTTT
TTTACATTTG GGAGTTTTTT TGTTAAAGAA TATTTAGTAA TTCCAGAGCA AAGACTCAGT
CCTGCATTAA CGCTGTTTTA TTTTTCCATT GTTATTTTTA TACTTTCTAT AGCTACATCC
CTTTTGACTT CATTAGTTAT ATCTCATGAA AACATGAAGG TTTATGCAAT TTTATCTGTC
ATTGAAGCAC TGCTTAAATT GATGTCTGCC TTTATTCTTG CATATGAAAT TGAGGATAAG
TTAATAACAT ATGGCGCTCT TGTAATGCTG TCTTCTTTGA TAGTTTTTAT GCTGTATAAT
GTTGCATGCA TAAAATACTA TAAAAAATAT CGAATAAGTA TTATTGGGTT TGACAAACAA
CTATTTGTAG ATACTGTAAA ATTTTCATCT TGGACACTGT TTGGCTTTTT TACATCAGTA
CTGCGTACAC ATGCTACAAC CCTACTGATT AATCAGTGGT TTAATCCTGT TGTTGTTGCT
GCACGAGTTA TTTCTAATAC AATATCAAGT CAGCTTATGA TATTTGCTAA TAATCTTAAC
GTGAGTCTCT ACCCCCCGAT CGTGAGAAAT TATGCAAATA AGGATGTAAA TGGTGTCAAC
ACCATTCTGA TTGAGGGGAG TAAGATTTCC TTTTTTTTAG TTTGGTTATT AGCTCTTCCA
ATGCTTGTAG AGACTGAGTT TTTCCTTAAA GTGTGGTTGG TGACTCCACC AGTTGACTCA
ATATCATTCA CACGCCTTGC ATTAATTGAG GCGCTTTTAA TGTCGTTAGG CTTAGTAGTA
GGAAGTGCTG CTAGAGCTAC GGGAAAGATC AAGAAATATG AGTTAATTTT AGGTGCGGTC
CAAATTTTAA CATTCGTTGT AACCGTGTTT GTATTATATA TAGGGTACCC AGCTTACAGT
GTATTTGTTA TTGGTATTGT AACAAATTTA ATAATGCTTT TTTTGAGACT TTGTATTTTA
CAATTTTTGA TGGGCTTTAG TATGAAAGCT TTTATTAGCA AGGTCTTGCC TACAGTAAGT
TTTATGGTTA TTACATCTTC TGTTTTTTCT GTTTTTCTTA GGCAAGAATT TCAAAATGGA
TGGGCTAGGG TCGTTGTTAC TCTATTTATA GGTACATTTT TCTCCTTTCT AGTAATGTAC
AAATATGGTT TGAGCGCAGA GTTAAAGATT AAGCTTAAAT CTAAATTAAT CGATTGGATA
AGACGATAA
|
|---|
| Protein sequence | MNKKIIVNTL ALYSRQALVV LINLYVVRIV LNELGVSDYG VYNVILGVTA IFSFIPSAMT
VSVQRQFVFS IEKGRESLKR CFSSCLVIYL LMIALSSMLF FTFGSFFVKE YLVIPEQRLS
PALTLFYFSI VIFILSIATS LLTSLVISHE NMKVYAILSV IEALLKLMSA FILAYEIEDK
LITYGALVML SSLIVFMLYN VACIKYYKKY RISIIGFDKQ LFVDTVKFSS WTLFGFFTSV
LRTHATTLLI NQWFNPVVVA ARVISNTISS QLMIFANNLN VSLYPPIVRN YANKDVNGVN
TILIEGSKIS FFLVWLLALP MLVETEFFLK VWLVTPPVDS ISFTRLALIE ALLMSLGLVV
GSAARATGKI KKYELILGAV QILTFVVTVF VLYIGYPAYS VFVIGIVTNL IMLFLRLCIL
QFLMGFSMKA FISKVLPTVS FMVITSSVFS VFLRQEFQNG WARVVVTLFI GTFFSFLVMY
KYGLSAELKI KLKSKLIDWI RR
|
|---|
| |