Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0161 |
Symbol | rplB |
ID | 4920665 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 181138 |
End bp | 181965 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640161680 |
Product | 50S ribosomal protein L2 |
Protein accession | YP_001092292 |
Protein GI | 127511095 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0090] Ribosomal protein L2 |
TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000128131 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000051786 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCAGTTA TTAAGTGTAA GCCAACCTCT GCTGGTCGTC GCCACGTTGT TAAAGTGGTG AACAGCGATC TGCATAAGGG TAAACCCTTT GCTGGCCTGT TGGCGAAAAA AGCTAAGAGC GGTGGCCGTA ACAACACCGG TCGTATTACT GTTCGTCACG TAGGTGGTGG ACACAAGCAG CACTACCGTA TTGTTGACTT CAAGCGCAAC AAAGACGGTA TCCCTGCTAA AGTAGAGCGT TTGGAATATG ATCCAAACCG TACCGCTAAC ATCGCACTTG TTTTGTATGC TGATGGTGAG CGTCGTTATA TCCTTGCTGC TAAAGGCATG CAAGCTGGTG ATCAAATCCA GTCTGGTATC GATGCTGAAA TCAAAGCGGG TAACGCTTTG CCACTACGCA ACATCCCAGT AGGTAGCGTT GTTCACGCAG TTGAAATGAA GCCTGGTAAA GGTGCTCAGA TCGCTCGTTC AGCAGGTACC TATGTACAAG TTGTAGCTCG TGACGGCGCA TACGCCACTC TACGTCTTCG CTCTGGCGAA ATGCGTAAAG TGCCAGTAGA TTGCCGCGCG ACATTAGGTG AAGTTGGTAA TGCCGAGCAT ATGCTACGCC AGTTGGGTAA AGCAGGTGCT AAGCGCTGGA GAGGCGTACG CCCAACAGTT CGTGGTGTTG CAATGAACCC AGTAGACCAT CCACATGGTG GTGGTGAAGG CCGTACATCT GGTGGCCGTC ACCCAGTGAC TCCATGGGGT GTCCCAACTA AGGGTTATAA GACCCGTAGT AACAAACGCA CCGACAAGTA CATCGTACGT CGTCGTAACA AAAAGTAA
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Protein sequence | MAVIKCKPTS AGRRHVVKVV NSDLHKGKPF AGLLAKKAKS GGRNNTGRIT VRHVGGGHKQ HYRIVDFKRN KDGIPAKVER LEYDPNRTAN IALVLYADGE RRYILAAKGM QAGDQIQSGI DAEIKAGNAL PLRNIPVGSV VHAVEMKPGK GAQIARSAGT YVQVVARDGA YATLRLRSGE MRKVPVDCRA TLGEVGNAEH MLRQLGKAGA KRWRGVRPTV RGVAMNPVDH PHGGGEGRTS GGRHPVTPWG VPTKGYKTRS NKRTDKYIVR RRNKK
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