| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0149 |
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| Symbol | rplJ |
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| ID | 4922639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 164826 |
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| End bp | 165323 |
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| Gene Length | 498 bp |
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| Protein Length | 165 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640161668 |
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| Product | 50S ribosomal protein L10 |
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| Protein accession | YP_001092280 |
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| Protein GI | 127511083 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0244] Ribosomal protein L10 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000191294 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.034689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCATTAA GACTCGAAGA CAAAAAAGCG ATTGTTGCTG AAGTCAACGA AGCTGCCAAA
GGTGCTTTAT CTGCAGTTGT AGCCGATTCT CGCGGTGTGA CTGTAGGTGA TATGACCGGT
CTTCGTAAAA CCGCTCGTGA ATCTGGTGTT TACATTAAAG TTGTACGTAA CACACTAGTT
AAGCGCGCTG TTGAAGGTAC TGATTTCGAG TGCCTAAGCG AAACATTTAC TGGTCCTACT
TTGATTGCAT TCTCTAACGA GCACCCAGGT GCCGCTGCGC GTCTTCTTAA AGATTTCGCG
AAAGCTCAAG GGAACTTTGA AATCAAAGCA GCAGCCTTTG AAGGGGAATT AATCCCTGCA
AGCGACATTG ATCGTTTAGC AAAACTACCA ACATACGAAG AAGCACTAGC ACAGTTCATG
ATGACTATGA AAGAAGCATC TGCTGGCAAG TTCGTTCGTA CATTGGCCGC TCTACGCGAT
CAGAAAGAAG CTGCTTAA
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| Protein sequence | MALRLEDKKA IVAEVNEAAK GALSAVVADS RGVTVGDMTG LRKTARESGV YIKVVRNTLV
KRAVEGTDFE CLSETFTGPT LIAFSNEHPG AAARLLKDFA KAQGNFEIKA AAFEGELIPA
SDIDRLAKLP TYEEALAQFM MTMKEASAGK FVRTLAALRD QKEAA
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