| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0940 |
|---|
| Symbol | |
|---|
| ID | 4924272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1081337 |
|---|
| End bp | 1082449 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162472 |
|---|
| Product | permease YjgP/YjgQ family protein |
|---|
| Protein accession | YP_001093070 |
|---|
| Protein GI | 127511873 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000695544 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATTGTAT TTAGATACTT GATTCGTGAA GTTTTAAAAG CGCAGATGGC AGTGCTTTTA
GTACTGTTAG CTATTTTTAT TAGCCAACAT TTTGTTCGTG TACTCGCTGA TGCATCCGAT
GGCGAGTTTC CCGCCTCTCT GGTGATGACC CTCCTAGGCC TTAATCTTCC CTATCTTGCC
GTGCTTGTGG TGCCTCTGAG TCTGTTTTTG GGGATCCTGG TGGCCCATGG CCGTATGTAC
GCCGAAAGCG AGATGGTGGT CTTCCACAGC GTCGGCGTGA GTGAATGGTA TGTCACTCGG
GTGACCCTGC TACTCGCCGT CGCCAACATG CTGTTTACCG GCTTTTTAGT CATCTATGTC
ACCCCCTGGG CCGAAGAGAC CCAAAACCGT GTGCTTGAAA ATGCCCAGTC GGAGGCAGGC
CTGGCGGCAT TGACCCAGGG GCGTTTCCAG ACCAGTCCTA ACGGCCGCGC GGTACTCTTC
GTCGAGCGGA TCGGCCGTGA CAATCAACTG GATAAGGTGT TCGTGGCTCA GCTACCAGAC
CCGGAAGATG GCGCCAGCCA GTCCAATATC GTGGTGGCCC AAGGGGGCAG CGTGATCGAG
GATGAAAGCG GCGAGCAGCG CCTCAAGCTC AACGATGGTA TCCAGTACCA GAGCAAGCAG
AATCAGCTCG ATTATCAGGT GGTGCAGTTT GCCGGTTACG AGATGCAGAT CAAGGAGCAG
GAGGTGGATC AGCGCCGCCG CAAACTGTCG GCCTTGCCAA TCGACCAGCT GCTGGATACC
GAGGGGCCCG AGGCCGTGGC CGAGTTCCAC TGGCGTCTGG CCATCCCGCT GGCGATCCCT
TTCATGACGC TGATCGCTGT GCCCATGGCG CGGGTGAATG TGCGCCAGGG TAAGTTTGCC
AAGATGTTCC CGGCGATCTT GCTCTATCTG GGTTATTTCG GCTTGATGAT TGCCGGGCGC
AAGGCGCTCG AAGATGAGGT GATCCCAGCC TATCTCGGTA TGTGGTGGAT CCATGCCTCG
GCGCTGTTTT TAGGGATGTT GCTGCTGAGT AAGGAGCGCC CCGCGGGGGC TAAGCTTTCT
GGCTTGCTAA AGCGTAAGAA GGTGGCGGCA TGA
|
|---|
| Protein sequence | MIVFRYLIRE VLKAQMAVLL VLLAIFISQH FVRVLADASD GEFPASLVMT LLGLNLPYLA
VLVVPLSLFL GILVAHGRMY AESEMVVFHS VGVSEWYVTR VTLLLAVANM LFTGFLVIYV
TPWAEETQNR VLENAQSEAG LAALTQGRFQ TSPNGRAVLF VERIGRDNQL DKVFVAQLPD
PEDGASQSNI VVAQGGSVIE DESGEQRLKL NDGIQYQSKQ NQLDYQVVQF AGYEMQIKEQ
EVDQRRRKLS ALPIDQLLDT EGPEAVAEFH WRLAIPLAIP FMTLIAVPMA RVNVRQGKFA
KMFPAILLYL GYFGLMIAGR KALEDEVIPA YLGMWWIHAS ALFLGMLLLS KERPAGAKLS
GLLKRKKVAA
|
|---|
| |