| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1610 |
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| Symbol | |
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| ID | 4921981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1841674 |
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| End bp | 1842564 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163172 |
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| Product | cytidine deaminase |
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| Protein accession | YP_001093736 |
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| Protein GI | 127512539 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0295] Cytidine deaminase |
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| TIGRFAM ID | [TIGR01355] cytidine deaminase, homodimeric |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000173309 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCAAGATA GATTTGTTCA CTGCATAGCT CAACTGCCTC AACCTTTGGC AGATCAATTA
GTCCCTTTAT TGAACCAGGA CTTTGTGGGG CATATGGACG CCCAGCAGGT AGCTGACTTA
GCCGCGGCCA CGCAGATGAG CCAGGATGAG TTGCTGTTAG CCCTGCTGCC CATCGCCGCC
GCACTTGCCA AGCCTCCCAT TAGCGAGTTT TATGTGGGCG CCATCGCCAA GGGCGCCAGC
GGTGACATCT ACATGGGGGC CAACCTAGAA CTGGACGGCG AAGCCCTGTT TCATAGCGTC
CATGCCGAGC AGAGCGCCAT CAGCCACGCC TGGTTAAGCG GTGAGACTGG CATCGAAGAT
ATCATAGTCA ACGCCTCTCC CTGTGGTCAC TGTCGCCAGT TTATGAACGA ATTGGTCGAG
GGCCAAGCCA TCCGCATCCA CCTGCCTGAG CAGGCCACTC AGCCCTTGTC TCACTATCTG
CCCTACGCCT TCGGTCCGGC CGATCTGAAT ATCAAGACGC CACTGCTCTC CAAACAGCAA
CATGAGTTTA CCCTGGAAAG CGCCGATCCC ATGATCATCG AGGCGCTGGA TCACCTGAGC
CTGAGCTACG CGCCCTATAG TGAAAGCTAT GCCGCCGTGG TGTTAGAGAC CCGAGATGGC
GCGACCTTCT GCGGCCGCTA TGCGGAAAAC GCCGCCTTCA ACCCTTCCAT GCTGCCGATG
CAGATGGCGT TGTCGGCCAT GGCCAGACAT AACCGTGATT TCAGCGAGAT CAATCGCGCC
GTGTTGATCG AATCCAGCCA GGGCAAGATC TCCCTGGTAG GCGCCACCAT GGATGCCCTG
CACGCGGTTG CCGCCGTAGA ACTTGAACAC ATCATGGTCG ATCCGGTTTA A
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| Protein sequence | MQDRFVHCIA QLPQPLADQL VPLLNQDFVG HMDAQQVADL AAATQMSQDE LLLALLPIAA
ALAKPPISEF YVGAIAKGAS GDIYMGANLE LDGEALFHSV HAEQSAISHA WLSGETGIED
IIVNASPCGH CRQFMNELVE GQAIRIHLPE QATQPLSHYL PYAFGPADLN IKTPLLSKQQ
HEFTLESADP MIIEALDHLS LSYAPYSESY AAVVLETRDG ATFCGRYAEN AAFNPSMLPM
QMALSAMARH NRDFSEINRA VLIESSQGKI SLVGATMDAL HAVAAVELEH IMVDPV
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