Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0534 |
Symbol | |
ID | 4922836 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 606789 |
End bp | 608156 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640162063 |
Product | major facilitator transporter |
Protein accession | YP_001092665 |
Protein GI | 127511468 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000100009 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAATA ATGGACTGTC TAAGACTGAG AAAAAAGTCG CGTTTTCACT AGCCAGTGTA TTTGGGCTAC GCATGATGGG CTTGTTTATG ATCATGCCTG TCTTTGCGTT GTACGGACAA CACCTTGAGG GATTCTCTCC CCTGTGGGTG GGGATTGCCA TCGGGGCCTA TGGCCTAACC CAGGCCATCT TGCAGATCCC CATGGGGATC CTATCGGACA GATATGGCCG CAAGCCTATC ATTCTTATCG GCCTGGCCCT GTTTGCGCTG GGCAGTCTGC TGGCCGCCTC GGCCGATTCT ATCTATGGCG TCGTCGCCGG ACGAGCCCTA CAGGGGATGG GGGCGATAGC CGCCGCCGTG TTGGCCCTGG CCGCCGACCT GACCCGTGAC GAGCAACGCA CTAAGGTGAT GGCCATCATA GGCATGTGCA TCGGCTTCTC CTTCGCGCTC TCTCTGCTGG TGGGGCCGAT CGTGGCCGAG CATCTTGGTC TGTCGGGTCT GTTTGCGATG ACGGCCGGTC TCGCCCTGTT GGGGATGGTG ATAGTGCAGC TGCTGGTGCC TAACCCCATA GGTCAGGCGC CCAAAGGCGA TACCGTCGCC GCGCCAGCCA AGCTCAAGGC GATGCTCACC GATCCGCAGC TGTTCCGCTT GGATGCGGGT ATCTTCATCC TGCATCTGGT GTTAACCGCC GTATTTGTCG CGCTGCCGCT GGATCTGGTC GATGCCGGCC TGGTGAAAGA GAAGCACTGG ATGCTCTATT TCCCCGCCTT CGTGGGGGCC TTCTTCCTCA TGGTGCCGCT GATCATCATA GGGGTGAAGA AGAAAAACAC TAAGGCGACC TTCCAGATTG CCCTGCTTAT CATGATCGCC GCCCTGGCTG CCATGGCGCT GTTTGCCAAC AGCCTGGTGG TGCTGAGCGT TGCCGTGGTG CTCTTCTTCA CCGGTTTCAA CTATCTCGAA GCATCCCTGC CAAGCCTAAT CGCTAAGTTC TGCCCCGTGG GCGACAAGGG ATCGGCCATG GGGGTCTACT CTACCAGTCA GTTCCTCGGC GCCTTCTGTG GAGGCCTGCT GGGTGGCGGC GCCTATCAGC TGCTGGGAGC CGCCGGTGTG TTCGCGGTGG CACTGGGCCT GATGTGTATA TGGCTGCTGC TAACATTGGG GATGCAAAAC CCCATACTGT TAAAGAGTTA CACCCTGGAA GCCGAGGTGG AAGGTAAGGA GCAGGCCCGC GCTATGGCGA CCGAGCTATC GCAGCTGCCC GGCGTGGCCG AGGCCATTGT GGTGCTTGAG GAGAAGGTCG CTTATTTAAA AGTTGATGAG CATTTCGATT TGAGACAGGC GCGAGCTGTG TTAGGCTCTT CCAATTAA
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Protein sequence | MANNGLSKTE KKVAFSLASV FGLRMMGLFM IMPVFALYGQ HLEGFSPLWV GIAIGAYGLT QAILQIPMGI LSDRYGRKPI ILIGLALFAL GSLLAASADS IYGVVAGRAL QGMGAIAAAV LALAADLTRD EQRTKVMAII GMCIGFSFAL SLLVGPIVAE HLGLSGLFAM TAGLALLGMV IVQLLVPNPI GQAPKGDTVA APAKLKAMLT DPQLFRLDAG IFILHLVLTA VFVALPLDLV DAGLVKEKHW MLYFPAFVGA FFLMVPLIII GVKKKNTKAT FQIALLIMIA ALAAMALFAN SLVVLSVAVV LFFTGFNYLE ASLPSLIAKF CPVGDKGSAM GVYSTSQFLG AFCGGLLGGG AYQLLGAAGV FAVALGLMCI WLLLTLGMQN PILLKSYTLE AEVEGKEQAR AMATELSQLP GVAEAIVVLE EKVAYLKVDE HFDLRQARAV LGSSN
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