| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0534 |
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| Symbol | |
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| ID | 4922836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 606789 |
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| End bp | 608156 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162063 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001092665 |
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| Protein GI | 127511468 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000100009 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAATA ATGGACTGTC TAAGACTGAG AAAAAAGTCG CGTTTTCACT AGCCAGTGTA
TTTGGGCTAC GCATGATGGG CTTGTTTATG ATCATGCCTG TCTTTGCGTT GTACGGACAA
CACCTTGAGG GATTCTCTCC CCTGTGGGTG GGGATTGCCA TCGGGGCCTA TGGCCTAACC
CAGGCCATCT TGCAGATCCC CATGGGGATC CTATCGGACA GATATGGCCG CAAGCCTATC
ATTCTTATCG GCCTGGCCCT GTTTGCGCTG GGCAGTCTGC TGGCCGCCTC GGCCGATTCT
ATCTATGGCG TCGTCGCCGG ACGAGCCCTA CAGGGGATGG GGGCGATAGC CGCCGCCGTG
TTGGCCCTGG CCGCCGACCT GACCCGTGAC GAGCAACGCA CTAAGGTGAT GGCCATCATA
GGCATGTGCA TCGGCTTCTC CTTCGCGCTC TCTCTGCTGG TGGGGCCGAT CGTGGCCGAG
CATCTTGGTC TGTCGGGTCT GTTTGCGATG ACGGCCGGTC TCGCCCTGTT GGGGATGGTG
ATAGTGCAGC TGCTGGTGCC TAACCCCATA GGTCAGGCGC CCAAAGGCGA TACCGTCGCC
GCGCCAGCCA AGCTCAAGGC GATGCTCACC GATCCGCAGC TGTTCCGCTT GGATGCGGGT
ATCTTCATCC TGCATCTGGT GTTAACCGCC GTATTTGTCG CGCTGCCGCT GGATCTGGTC
GATGCCGGCC TGGTGAAAGA GAAGCACTGG ATGCTCTATT TCCCCGCCTT CGTGGGGGCC
TTCTTCCTCA TGGTGCCGCT GATCATCATA GGGGTGAAGA AGAAAAACAC TAAGGCGACC
TTCCAGATTG CCCTGCTTAT CATGATCGCC GCCCTGGCTG CCATGGCGCT GTTTGCCAAC
AGCCTGGTGG TGCTGAGCGT TGCCGTGGTG CTCTTCTTCA CCGGTTTCAA CTATCTCGAA
GCATCCCTGC CAAGCCTAAT CGCTAAGTTC TGCCCCGTGG GCGACAAGGG ATCGGCCATG
GGGGTCTACT CTACCAGTCA GTTCCTCGGC GCCTTCTGTG GAGGCCTGCT GGGTGGCGGC
GCCTATCAGC TGCTGGGAGC CGCCGGTGTG TTCGCGGTGG CACTGGGCCT GATGTGTATA
TGGCTGCTGC TAACATTGGG GATGCAAAAC CCCATACTGT TAAAGAGTTA CACCCTGGAA
GCCGAGGTGG AAGGTAAGGA GCAGGCCCGC GCTATGGCGA CCGAGCTATC GCAGCTGCCC
GGCGTGGCCG AGGCCATTGT GGTGCTTGAG GAGAAGGTCG CTTATTTAAA AGTTGATGAG
CATTTCGATT TGAGACAGGC GCGAGCTGTG TTAGGCTCTT CCAATTAA
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| Protein sequence | MANNGLSKTE KKVAFSLASV FGLRMMGLFM IMPVFALYGQ HLEGFSPLWV GIAIGAYGLT
QAILQIPMGI LSDRYGRKPI ILIGLALFAL GSLLAASADS IYGVVAGRAL QGMGAIAAAV
LALAADLTRD EQRTKVMAII GMCIGFSFAL SLLVGPIVAE HLGLSGLFAM TAGLALLGMV
IVQLLVPNPI GQAPKGDTVA APAKLKAMLT DPQLFRLDAG IFILHLVLTA VFVALPLDLV
DAGLVKEKHW MLYFPAFVGA FFLMVPLIII GVKKKNTKAT FQIALLIMIA ALAAMALFAN
SLVVLSVAVV LFFTGFNYLE ASLPSLIAKF CPVGDKGSAM GVYSTSQFLG AFCGGLLGGG
AYQLLGAAGV FAVALGLMCI WLLLTLGMQN PILLKSYTLE AEVEGKEQAR AMATELSQLP
GVAEAIVVLE EKVAYLKVDE HFDLRQARAV LGSSN
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