| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0201 |
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| Symbol | |
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| ID | 4922891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 213864 |
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| End bp | 215024 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161724 |
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| Product | acetylornithine deacetylase |
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| Protein accession | YP_001092332 |
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| Protein GI | 127511135 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01892] acetylornithine deacetylase (ArgE) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000604653 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.090573 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAAA CCTTTCCCGA TATCAAGCAA TCCTTCCGTG AGCTGATCGC CACGCCGTCC
ATCAGTGCCC TCGAAGCCGA ACTCGACATG AGCAACCAAG GTGTGGTGAC CCTGCTGAGC
CAGTGGCTCA CAGATCTGGG CTTCGACTGC CAGATGCAGG CCGTCCCCGA CACCCGTGGT
AAGCACAACC TGCTGGCCAA GATCGGCCAG GGACGCGGTG GACTGCTGCT GGCGGGACAT
ACGGATACGG TTCCTTTCGA CGAGGGACGC TGGAGTCAGG ATCCCTTTAC CCTGACCGAG
AAGGATAATC GCTGGTACGG ACTAGGCAGC TGCGATATGA AGGGCTTCTT CGCCCTGGTC
ATAGAGGCCG TGCGCCAGAT GCCGACCCAA GATTTCGTGC GGCCGCTCTA CATACTCGCC
AGCGCCGATG AAGAAACCAC TATGAATGGC GCCAAAGCCT TCGCCCAGTC TAAGGCCATC
GCGCCTGAAT ATGCACTCAT AGGCGAGCCC ACCGGCCTAA AGCCTGTCTA CATGCATAAG
GGACACTTGG CCCAGGGCAT CCGCATCACG GGGCGTAGCG GTCACTCTTC GGATCCCGCC
AAGGGACTCA ACGCCATAGA GATCATGCAT CAGGTGATAG GCCAGCTCCT CAAGCTGAAG
CAACACCTGG CGGAGCACTA CCGCGAAGAA GCCTTCAGCG TGCCCTATCC CACCATGAAC
TTTGGCCATA TTCACGGTGG CGACGCCGCC AACCGCATCT GCGGCTGCTG CGATCTGCAC
CTGGATATCC GCCCCCTGCC CGGCCTGCCA TTAGAGGTCT TGGAGCAACT ACTGACCCAA
TACCTGGCCG AACTGAGCCA GCGCTATCCA GGGTCCATCA GCATAAGCCA GCTCTATCCC
GGTTCTCAGC CCTTCGCGGG ACAGGCAGAT GCGCAATGGT CACAGCTAGT CGCCCAGCTA
TCGAATCAGG CCCCCGAGGT AGTCAACTAT GCGACTGAGG CCCCCTATAT TCAGCAACTG
GGCTGTCAAA CCTTGGTCTG GGGACCGGGC AGCATAGAGC AGGCACATCA GCCAGATGAG
TACCTGGACA CCGCCTACAT CAACAAAACC GTCGACTTGC TAAAACAGTT GATTTACCAC
GCCTGCATAA AGGCGCCATA A
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| Protein sequence | MMKTFPDIKQ SFRELIATPS ISALEAELDM SNQGVVTLLS QWLTDLGFDC QMQAVPDTRG
KHNLLAKIGQ GRGGLLLAGH TDTVPFDEGR WSQDPFTLTE KDNRWYGLGS CDMKGFFALV
IEAVRQMPTQ DFVRPLYILA SADEETTMNG AKAFAQSKAI APEYALIGEP TGLKPVYMHK
GHLAQGIRIT GRSGHSSDPA KGLNAIEIMH QVIGQLLKLK QHLAEHYREE AFSVPYPTMN
FGHIHGGDAA NRICGCCDLH LDIRPLPGLP LEVLEQLLTQ YLAELSQRYP GSISISQLYP
GSQPFAGQAD AQWSQLVAQL SNQAPEVVNY ATEAPYIQQL GCQTLVWGPG SIEQAHQPDE
YLDTAYINKT VDLLKQLIYH ACIKAP
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