| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0160 |
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| Symbol | rplW |
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| ID | 4920650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 180822 |
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| End bp | 181121 |
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| Gene Length | 300 bp |
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| Protein Length | 99 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640161679 |
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| Product | 50S ribosomal protein L23 |
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| Protein accession | YP_001092291 |
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| Protein GI | 127511094 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0089] Ribosomal protein L23 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000144621 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000412321 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGATAAGCG AAGAACGTTT GCTAAAAGTT ATTCTAGCGC CACACATCTC TGAAAAGAGT
ACTGTTTGCG CTGAAAATAA CAACACGGTC GTTTTCCGTG TAGCTATCGA TGCGACTAAA
GCTGAAGTTA AAGCTGCAGT AGCTAAGTTG TTCGAAGTTG AAGTAGATTC AGTTCGCACT
TTGGTTAACA AAGGTAAGAC TAAGCGTCAC GGTGCCCGTA CTGGCCGTCG TAGCGATTGG
AAAAAAGCCT ATGTGACTTT AGCTGCTGGT GCTGACATCG ATTTCGTCGG CGCTGAGTAA
|
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| Protein sequence | MISEERLLKV ILAPHISEKS TVCAENNNTV VFRVAIDATK AEVKAAVAKL FEVEVDSVRT
LVNKGKTKRH GARTGRRSDW KKAYVTLAAG ADIDFVGAE
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