| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0001 |
|---|
| Symbol | dnaA |
|---|
| ID | 4920637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 111 |
|---|
| End bp | 1490 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640161513 |
|---|
| Product | chromosomal replication initiation protein |
|---|
| Protein accession | YP_001092133 |
|---|
| Protein GI | 127510936 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0593] ATPase involved in DNA replication initiation |
|---|
| TIGRFAM ID | [TIGR00362] chromosomal replication initiator protein DnaA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000781636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000344978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGTTT CACTTTGGCA GCAATGTATC GGACGACTAC AGGACGAGCT TTCCGCTCAG
CAATTCAGCA TGTGGATCAG ACCGTTACAA GCCGAAATGG ATGGGGAAAC TCTAGTGCTA
TATGCACCGA ATCGATTCGT ACTCGATTGG GTGAGAGATA AGTACCTCAA TACCATCAAT
CAGTTCTTCA CCGAACAGAT GGGTAGCGAC GCCCCCAAGC TGCGTTTCGA CATCGGTAGT
CGCCCTGCGA GCAAACCGGC AGCGCCGGCT GCCTCGACCA AGAGCCCTGT TGCACCTGCG
GCAAAATCCC CAAGCAAGCC GTCATTTAAT AGCAACGAAC CCGCGGCCAC GGCGAATCAT
AGAAGCAATA TGAATCCCAC CTACCAGTTC GACAACTTCG TCGAGGGTAA GTCTAACCAG
CTGGGTAAGG CAGCCGCCTT GCAGGTGTCT GAAAATCCAG GTGGCGCCTA TAACCCCTTG
TTCCTCTACG GTGGTACGGG CTTGGGTAAG ACTCACCTGC TGCACGCCGT GGGTAATGGC
ATCATCAAGA ACAATCCGAA TGCCAAGGTG GTTTACATGC ATTCCGAGCG CTTCGTACAG
GATATGGTGA AGGCGCTGCA GAACAACGCG ATCGAAGAGT TCAAACGTTA CTACCGTAGC
GTCGATGCGT TGTTTATCGA TGATATTCAA TTCTTTGCTA ACAAAGACAG ATCTCAGGAA
GAGTTCTTCC ATACCTTTAA TGCCCTGCTA GAGGGCAATC ATCAGGTGAT CCTGACTTCA
GATCGCTACC CCAAGGAGAT CGACGGGGTG GAAGATCGCC TCAAGTCGCG CTTCGGTTGG
GGTCTGACGG TGGCCATTGA GCCGCCCGAG CTAGAGACCC GTGTGGCGAT CCTGATGCGT
AAGGCCCAGG AGAGTGGTAT CAACCTGCCC GATGAGGTGG CCTTCTTTAT TGCCAAGCGT
CTGAGATCTA ACGTTCGTGA GCTGGAAGGC GCGCTTAATA GGGTGATCGC CAACGCCAAC
TTTACCGGAC GTCCGATCAC TATCGATTTT GTGCGTGAAG CCCTAAGAGA TCTCTTGGCT
CTGCAGGAAA AATTGGTCAC TATAGACAAC ATTCAGAAAA CCGTAGCTGA ATACTATAAG
ATCAAGATGG CCGACATGCT GTCGAAGCGC CGCTCACGCA GCGTTGCCAG ACCGAGACAG
ATGGCGATGG CATTGTCGAA AGAGTTAACT AACCAGAGTT TGCCCGAGAT TGGCGATGCC
TTTGGTGGCC GTGATCATAC GACAGTGCTA CACGCCTGTC GCAAAATTGC CCAGCTACGT
GAAGAAAGTC ATGACATTAA AGAAGATTAT GCTAACTTAA TCCGTACGCT ATCTTCATAA
|
|---|
| Protein sequence | MAVSLWQQCI GRLQDELSAQ QFSMWIRPLQ AEMDGETLVL YAPNRFVLDW VRDKYLNTIN
QFFTEQMGSD APKLRFDIGS RPASKPAAPA ASTKSPVAPA AKSPSKPSFN SNEPAATANH
RSNMNPTYQF DNFVEGKSNQ LGKAAALQVS ENPGGAYNPL FLYGGTGLGK THLLHAVGNG
IIKNNPNAKV VYMHSERFVQ DMVKALQNNA IEEFKRYYRS VDALFIDDIQ FFANKDRSQE
EFFHTFNALL EGNHQVILTS DRYPKEIDGV EDRLKSRFGW GLTVAIEPPE LETRVAILMR
KAQESGINLP DEVAFFIAKR LRSNVRELEG ALNRVIANAN FTGRPITIDF VREALRDLLA
LQEKLVTIDN IQKTVAEYYK IKMADMLSKR RSRSVARPRQ MAMALSKELT NQSLPEIGDA
FGGRDHTTVL HACRKIAQLR EESHDIKEDY ANLIRTLSS
|
|---|
| |