More than 300 homologs were found in PanDaTox collection
for query gene Patl_2561 on replicon NC_008228
Organism: Pseudoalteromonas atlantica T6c



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  100 
 
 
517 aa  1061    Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_011138  MADE_02571  response regulator  52.25 
 
 
521 aa  521  1e-146  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  40.55 
 
 
522 aa  400  9.999999999999999e-111  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  41.41 
 
 
523 aa  391  1e-107  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_004347  SO_2366  response regulator  39.15 
 
 
525 aa  384  1e-105  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  39.55 
 
 
521 aa  377  1e-103  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  40.24 
 
 
525 aa  377  1e-103  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  40.24 
 
 
525 aa  377  1e-103  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  38.88 
 
 
523 aa  377  1e-103  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  38.52 
 
 
524 aa  377  1e-103  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  39.19 
 
 
525 aa  373  1e-102  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  38.23 
 
 
526 aa  374  1e-102  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  41.36 
 
 
531 aa  372  1e-101  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  38.21 
 
 
518 aa  370  1e-101  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  38.51 
 
 
523 aa  370  1e-101  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  38.51 
 
 
523 aa  370  1e-101  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  38.11 
 
 
523 aa  367  1e-100  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  38.11 
 
 
523 aa  367  1e-100  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  38.11 
 
 
523 aa  367  1e-100  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  38.51 
 
 
527 aa  358  9.999999999999999e-98  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  39.26 
 
 
508 aa  348  1e-94  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  37.17 
 
 
536 aa  333  6e-90  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  37.47 
 
 
515 aa  313  4.999999999999999e-84  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  37.29 
 
 
513 aa  311  2e-83  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  37.29 
 
 
513 aa  311  2e-83  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  37.27 
 
 
513 aa  311  2e-83  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  37.29 
 
 
513 aa  310  2.9999999999999997e-83  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  35.24 
 
 
522 aa  310  5e-83  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  38.97 
 
 
437 aa  301  2e-80  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  37.01 
 
 
520 aa  300  3e-80  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01215  Response regulator  34.72 
 
 
509 aa  297  4e-79  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  34.25 
 
 
529 aa  288  2e-76  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  33.85 
 
 
531 aa  278  2e-73  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  33.06 
 
 
512 aa  267  2.9999999999999995e-70  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  32.32 
 
 
525 aa  259  6e-68  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  30.71 
 
 
471 aa  254  2.0000000000000002e-66  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  42.63 
 
 
746 aa  248  2e-64  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  41.9 
 
 
578 aa  248  3e-64  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  41.72 
 
 
579 aa  247  4e-64  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  40.95 
 
 
581 aa  243  6e-63  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  40 
 
 
337 aa  241  2e-62  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_3058  phage head-tail adaptor, putative  39.39 
 
 
580 aa  239  1e-61  Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  39.05 
 
 
580 aa  235  1.0000000000000001e-60  Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  42.65 
 
 
741 aa  235  2.0000000000000002e-60  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  39.68 
 
 
582 aa  234  3e-60  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  40.51 
 
 
550 aa  232  1e-59  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2117  histidine kinase  37.43 
 
 
631 aa  221  3e-56  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  37.43 
 
 
593 aa  220  3.9999999999999997e-56  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  40.13 
 
 
740 aa  217  5e-55  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  36.47 
 
 
584 aa  213  7.999999999999999e-54  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  36.2 
 
 
613 aa  210  5e-53  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  36.66 
 
 
584 aa  202  9.999999999999999e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  39.53 
 
 
766 aa  198  2.0000000000000003e-49  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  36.01 
 
 
767 aa  198  3e-49  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  35.48 
 
 
584 aa  195  2e-48  Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.74 
 
 
763 aa  189  2e-46  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.5 
 
 
758 aa  185  2.0000000000000003e-45  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  49.03 
 
 
440 aa  183  6e-45  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  49.41 
 
 
519 aa  167  5e-40  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  49.08 
 
 
398 aa  167  5e-40  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  39.35 
 
 
432 aa  165  2.0000000000000002e-39  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1101  response regulator receiver modulated metal dependent phosphohydrolase  25 
 
 
450 aa  162  1e-38  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.28 
 
 
746 aa  160  7e-38  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0725  response regulator receiver modulated metal dependent phosphohydrolase  28.74 
 
 
498 aa  146  9e-34  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.11 
 
 
744 aa  146  1e-33  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.11 
 
 
744 aa  146  1e-33  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.11 
 
 
744 aa  145  2e-33  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.78 
 
 
744 aa  143  6e-33  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  32.79 
 
 
743 aa  142  9.999999999999999e-33  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2880  multi-sensor signal transduction histidine kinase  43.28 
 
 
576 aa  142  1.9999999999999998e-32  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  30.3 
 
 
733 aa  140  7e-32  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4124  response regulator receiver protein  51.91 
 
 
172 aa  140  7e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008752  Aave_2925  diguanylate cyclase/phosphodiesterase / diguanylate cyclase  29.97 
 
 
743 aa  138  3.0000000000000003e-31  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.249336 
 
 
-
 
NC_008576  Mmc1_0401  response regulator receiver sensor signal transduction histidine kinase  40.79 
 
 
415 aa  132  1.0000000000000001e-29  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.653943 
 
 
-
 
NC_008709  Ping_0306  metal dependent phosphohydrolase  33.33 
 
 
361 aa  129  1.0000000000000001e-28  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2945  response regulator receiver modulated metal dependent phosphohydrolase  35.75 
 
 
377 aa  126  1e-27  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  32 
 
 
348 aa  124  5e-27  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_013216  Dtox_4196  response regulator receiver modulated metal dependent phosphohydrolase  34.33 
 
 
350 aa  123  8e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0239  PAS/PAC sensor hybrid histidine kinase  42.6 
 
 
565 aa  123  9e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2138  metal dependent phosphohydrolase  32.32 
 
 
606 aa  122  9.999999999999999e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.258694  n/a   
 
 
-
 
NC_010717  PXO_00070  Two-component system response regulator RpfG  32.47 
 
 
353 aa  122  1.9999999999999998e-26  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0844737  n/a   
 
 
-
 
NC_008321  Shewmr4_0792  response regulator receiver modulated metal dependent phosphohydrolase  30.89 
 
 
331 aa  119  9.999999999999999e-26  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3231  response regulator receiver modulated metal dependent phosphohydrolase  30.89 
 
 
331 aa  119  9.999999999999999e-26  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010644  Emin_0051  metal dependent phosphohydrolase  32.5 
 
 
407 aa  119  9.999999999999999e-26  Elusimicrobium minutum Pei191  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1378  response regulator receiver modulated metal dependent phosphohydrolase  25.3 
 
 
506 aa  119  9.999999999999999e-26  Clostridium thermocellum ATCC 27405  Bacteria  unclonable  0.0000000458361  n/a   
 
 
-
 
NC_011313  VSAL_II0591  putative membrane associated signaling protein  31 
 
 
596 aa  117  3e-25  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  33.99 
 
 
359 aa  118  3e-25  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0663  response regulator receiver  31.86 
 
 
340 aa  118  3e-25  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  32.97 
 
 
348 aa  118  3e-25  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_4319  Metal dependent phosphohydrolase with a response regulator receiver protein  31.58 
 
 
382 aa  117  3e-25  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3111  response regulator receiver protein  31.79 
 
 
328 aa  117  3.9999999999999997e-25  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0637882 
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  30.69 
 
 
331 aa  117  6e-25  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  34.59 
 
 
338 aa  117  6e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  33.33 
 
 
338 aa  117  6.9999999999999995e-25  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  33.33 
 
 
338 aa  117  6.9999999999999995e-25  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3334  response regulator receiver modulated metal dependent phosphohydrolase  30.89 
 
 
331 aa  116  1.0000000000000001e-24  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  32.42 
 
 
348 aa  115  2.0000000000000002e-24  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  32.54 
 
 
338 aa  115  2.0000000000000002e-24  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1086  response regulator receiver modulated metal dependent phosphohydrolase  30.85 
 
 
331 aa  115  2.0000000000000002e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.226857  hitchhiker  0.0000000112469 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  32.54 
 
 
338 aa  115  2.0000000000000002e-24  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
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