| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1908 |
|---|
| Symbol | |
|---|
| ID | 3835332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 2211932 |
|---|
| End bp | 2213491 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637826007 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase |
|---|
| Protein accession | YP_426995 |
|---|
| Protein GI | 83593243 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.11693 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCGGA AACAGCTAAA TCATATAAAA TGTAGAGAAA ATTGTTCGCT TGTCGCCAAG
GCCGGATTTC GGCACCGTAG GGTCATAATC CAGGGGATAC AGTCAGCTAT GGTGCAAGAC
AGCGACGAGA TCTTGTTTGT CGAGGAAGAG GATCCCGTCG CAGGTTCCTT GCCTTCCGAT
GTGTCGCCCT GGAAGGTTTT GGTCGCCGAT GACGATCCCG AAGTCTTCAC GGTGACCCGG
CTGGTGCTGT CGGGATTTGT TTTCGCCGGG CGTGGCGTAT CCTTGCTTTA CGCCGGTTCG
GCGGCGGAAG CGACTGAAAT ACTCAGGCAA CAGTCCGATA TCGCCGTCGC CCTGCTTGAT
GTGGTGATGG AAACCGAGGA CGCCGGCCTA AAGCTGGTCA AGGTTATCCG CGATGACCTG
GGCAACAGTC ATTTGCGGAT TGTCTTGCGA ACCGGCCAGC CCGGGCAGGC GCCCGAACAC
GACGTGGTTA TGCGCTATGA CATCAACGAT TATCGCTCCA AGACCGAACT GACCGATACC
AAGCTGATCA CCACCCTGGT GTCGTCCCTG CGCTCCTATC AGCAGATCGA AGCCCTTGAA
CGCAGCCGCG CCGAACTGCG CGAAGCCCGT GATACCCTGG AGATCCGCGT CGCCGAACGC
ACCCGCGACC TGCGCGAAAG CGAGGCCCGG CTGCGCTCGA TCCTCGACGC CTCGGTTTTT
CCGATCCTGG TGCTGAGCGA GGAGGGCGAC CGGGTACGCT TTCTCAACGA TCACGCCGGC
GAGGCCCTGG GCTGGGCGCT TCTTGAGAAC ACCACGTCGA CGCTGCCCGA CCTGTGGGAA
AACCCCGTCG ATGGCGCCCG TTTGCTGGCG CGCACGGTCC AGCGCGGTCG GGTGCTCGAC
TGCGAATTCC GCTTGCGCGG GGCGGGCGGC GAGCCGTTCT GGGCCCTGGT CTCGACCATC
GCCATGTCCT ATGACGGGCA GCCGGCGGTC TTGCTGTCGT TTAATGACAT CACCGTTCAC
AAGCAGCGCG AGGAAGCCTG GCAGCGCTTG GCCCTGACCG ACCCGCTGAC CGGCCTGGGC
AATCGCCGGC TGCTGTTCGA TCGCGGCATC CTCGAGGTCG CCCGGGCGCG TCGCGGTTGT
TGGCCGCTTT CGGGGCTGAT GATCGATCTT GATCACTTCA AGCGGATCAA TGACACCCAG
GGCCATGCGG CGGGTGATGC GATCTTGCGC ACCCTGGCCG ATACCCTGCG CGAAAGCCTG
CGCGAGATCG ATGTCATCGC CCGCGTCGGC GGCGAGGAAT TCGCCATTCT GCTGCCCGAC
ACCTCCTTGA CGGCGGCCCA TGAGGTCGGC GAAAGGCTGC GGCTGTCGTG TCAGATCCCC
CAGCCCGTCG GCGGTCCGGT GACGATCAGC GTCGGCATCT CCACCCTGCA TCCCGAGGAT
CGTGGGCTGG GGGATATGTT GTCGCGCGCC GACGATGCGC TCTATCGGGC CAAGCGCAAC
GGCCGCGACC GGGTGGAAAT CGCCGATGAC TCTGAAGACA ATCAGGACGT CAGCCCCTGA
|
|---|
| Protein sequence | MGRKQLNHIK CRENCSLVAK AGFRHRRVII QGIQSAMVQD SDEILFVEEE DPVAGSLPSD
VSPWKVLVAD DDPEVFTVTR LVLSGFVFAG RGVSLLYAGS AAEATEILRQ QSDIAVALLD
VVMETEDAGL KLVKVIRDDL GNSHLRIVLR TGQPGQAPEH DVVMRYDIND YRSKTELTDT
KLITTLVSSL RSYQQIEALE RSRAELREAR DTLEIRVAER TRDLRESEAR LRSILDASVF
PILVLSEEGD RVRFLNDHAG EALGWALLEN TTSTLPDLWE NPVDGARLLA RTVQRGRVLD
CEFRLRGAGG EPFWALVSTI AMSYDGQPAV LLSFNDITVH KQREEAWQRL ALTDPLTGLG
NRRLLFDRGI LEVARARRGC WPLSGLMIDL DHFKRINDTQ GHAAGDAILR TLADTLRESL
REIDVIARVG GEEFAILLPD TSLTAAHEVG ERLRLSCQIP QPVGGPVTIS VGISTLHPED
RGLGDMLSRA DDALYRAKRN GRDRVEIADD SEDNQDVSP
|
|---|
| |