| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1361 |
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| Symbol | |
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| ID | 3965310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1760159 |
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| End bp | 1762399 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637920437 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_526835 |
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| Protein GI | 90021008 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATA AAAATGGGAA CGAATTGTTT TCTTTTGCCG AGGAGCCGGT AGAAGAAAAG
AAACAGCGGG AAGATTATTG TTGGTGGGTG CTAATCATTG ATGATGAAAA GGGCGTTCAC
TCTGCCACAG AGTTTGCCCT AAAAAATACC CAAATAATGG ATAGACCACT CAAGTTTTTA
CATGCTATGA GTGCTGCAGA AGGCATAAAA ATACTTGAAG AAAATAAAAA TATTGCCGTA
ATAATGCTAG ATGTGGTTAT GGAAACCCCA AATGCTGGAT TGGATATGGT TGCGATTATT
CGCGACAAAA TGGATATTCG CGACACCCGT ATTATTCTGC GCACTGGGCA GCCAAACCAA
GCCCCAGAAA TAGAAGTTAT TCGCGATTAC GACATTAATG ACTACAAATT AAAATCTGAA
CTCACCCAGT CAAAATTATT CGCGGCGCTA ACTACCGCGA TTCGCTCGTA CAAACAAATT
CGCATGATAG AAGCCGGCCG CAAGGGCTTG GATATGATTG TGCGGTCCAG CTCTGAACTG
CTCACTAAAA ATGGTATTCA CGCCTTTGCT CAAGGGGTTA TTGTGCACTT GGCTGGCCTG
TTAGATATTC CCGCCGAAGG CTTAATTTGC GTGCGGCGTC AGCAAAGTGA CACAGGCTCC
GAATCTAAAA TTATAGCTGC AGCAGGGCAC TATTGTCTGT TAGTTGATCA CCCTCTTGAA
GATCTTTCAG AAAGTGGGGC AAGAACATTA CTGGATACAT GTTTAGATAA GAAAAGTAAT
CAGTTTGGCG TGGACGGGGT AGCGCTATAT ATCGGCAGTG ATACCCGCGG CGATATGAGC
GCGTTTATAT CCAGCGATGT AGACATCGAT TCAGTTGATC AAAGTTTATT AGAAATATTC
TGTAATAATA TTGCCGCGTG CGCAGATAAC TTAATGCTAT TGGAACGGCT AAGTAGTCAT
GCTTATTTTG ACATTTTGGT TGGCCTGCCT AATAGAACCG CGCTTATTCA AAAAATAGAT
GAGCTTGTTG AAGACGATAG CTTACCAGAG CTTTATTTGG CGCTTGTAGA TATTGATAAC
TTTGCTGAGC TCAATGCTGC CCTCGGCAAA GATTATTGCG ACGAGCTATT GCGAGAAATT
GGTTTGCGCT TGCTAAACAA TTTCCCTGTT ACCTGCACTG TGGCGCGAAT AGCGGCAGAT
GTTTTTGCTG TGCTAGGCCC TAAAGACCAT GTAAAGCCTA TGGCAATAAG TGAGGTGTTT
AACAAGCCAT TTAAAGTGCG AGATAACGAT CAGGTGTTGT CTGTCACTTC TGGAATAGTC
CCGTTAACAG AAATGTCTGA GGGCGGTGGG CAAGCTATTA AAGAAGGTAG TATTGTACTT
AAGTCTGCCA AAGCTATTCG CCGCGGCGAA GTGGTTATGT TTAACCGAAA AATGGTTGAA
AAGGCTACTC AACATGTGGA AATGTTGCGG GAACTGCGCG AAGCGTTCGA TAGCGGCAAA
CTGTATCTCG CTTATCAACC TAAATTTGAT ATTAAAACAT TGGATGTTGT GGGATTGGAA
GCGCTGCTGC GCTGGGAGAA CAAACATGGT GTGATGGTGC CGCCCCAGCG TTTTATCCCG
CTTGCCGAGA AATCCGGTCT GATTGTAAGA ATGGGGGAGT GGGTTATGGA AAATGCAATT
GCAGAATTAC ATAAAGTACG CTCTTCCGGC TGGAATGATC TGAAAATGGG GGTAAATTTT
TCCGTAGCGC AGTTACGCCA CCCAGAAATA CTTGACGCTC TACGCGAATT GATAGACAGG
GTACAAGTTG ACCCAAATTT GGTTGACTTA GAAATTACCG AAACCATTGC CATGGATGAT
GTGAAAGGCA ATATGGAAGT GTTGACCCGT ATTAAAGATA TTGGCTTTGA GTTATCTGTT
GATGATTTCG GTACCGGTTT TTCTTCGTTA AGCTATTTGC AAAAAATGCC ATTTGATAAC
TTAAAAGTAG ATCAATCGTT TGTTCAGACT TCCGACACGC CAAGTGGACG AAAAATTGTA
GAAATGATTG TAAACCTAGG GCAAACACTT GGTATGAATG TCATTGCAGA GGGTGTTGAA
ACACGTGAAC AGCTGGACTT ACTTCGCGAG CTAGGTTGTC AGCAGGTGCA AGGTTATTTG
TTGGCTAAAC CCATGTCGTG TGACGAACTT ACAACTTGGC TGGCTAGTTT TAAAACGCAG
GGTATTACAT TAGACGGTTA G
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| Protein sequence | MSDKNGNELF SFAEEPVEEK KQREDYCWWV LIIDDEKGVH SATEFALKNT QIMDRPLKFL
HAMSAAEGIK ILEENKNIAV IMLDVVMETP NAGLDMVAII RDKMDIRDTR IILRTGQPNQ
APEIEVIRDY DINDYKLKSE LTQSKLFAAL TTAIRSYKQI RMIEAGRKGL DMIVRSSSEL
LTKNGIHAFA QGVIVHLAGL LDIPAEGLIC VRRQQSDTGS ESKIIAAAGH YCLLVDHPLE
DLSESGARTL LDTCLDKKSN QFGVDGVALY IGSDTRGDMS AFISSDVDID SVDQSLLEIF
CNNIAACADN LMLLERLSSH AYFDILVGLP NRTALIQKID ELVEDDSLPE LYLALVDIDN
FAELNAALGK DYCDELLREI GLRLLNNFPV TCTVARIAAD VFAVLGPKDH VKPMAISEVF
NKPFKVRDND QVLSVTSGIV PLTEMSEGGG QAIKEGSIVL KSAKAIRRGE VVMFNRKMVE
KATQHVEMLR ELREAFDSGK LYLAYQPKFD IKTLDVVGLE ALLRWENKHG VMVPPQRFIP
LAEKSGLIVR MGEWVMENAI AELHKVRSSG WNDLKMGVNF SVAQLRHPEI LDALRELIDR
VQVDPNLVDL EITETIAMDD VKGNMEVLTR IKDIGFELSV DDFGTGFSSL SYLQKMPFDN
LKVDQSFVQT SDTPSGRKIV EMIVNLGQTL GMNVIAEGVE TREQLDLLRE LGCQQVQGYL
LAKPMSCDEL TTWLASFKTQ GITLDG
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