More than 300 homologs were found in PanDaTox collection
for query gene RPB_4666 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  81.07 
 
 
581 aa  951    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  62.46 
 
 
584 aa  676    Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_007406  Nwi_3058  phage head-tail adaptor, putative  80.31 
 
 
580 aa  920    Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  88.26 
 
 
579 aa  1042    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_010172  Mext_2117  histidine kinase  60.48 
 
 
631 aa  687    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  61.94 
 
 
584 aa  685    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  60.65 
 
 
593 aa  689    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  58.68 
 
 
613 aa  679    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
578 aa  1174    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  85.37 
 
 
582 aa  1009    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  92.9 
 
 
550 aa  1014    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  83.22 
 
 
580 aa  982    Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  61.11 
 
 
584 aa  669    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  42.11 
 
 
522 aa  248  2e-64  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  41.9 
 
 
517 aa  248  3e-64  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  35.59 
 
 
526 aa  244  1.9999999999999999e-63  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_011138  MADE_02571  response regulator  43.1 
 
 
521 aa  243  6e-63  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  44.81 
 
 
337 aa  243  7.999999999999999e-63  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  43.87 
 
 
518 aa  242  1e-62  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  38.5 
 
 
523 aa  242  2e-62  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  38.25 
 
 
523 aa  239  1e-61  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  38.25 
 
 
523 aa  239  1e-61  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  38.25 
 
 
523 aa  238  3e-61  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  36.54 
 
 
524 aa  238  3e-61  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  38.86 
 
 
525 aa  236  7e-61  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  38.86 
 
 
525 aa  236  7e-61  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  38.25 
 
 
523 aa  236  1.0000000000000001e-60  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  38.25 
 
 
523 aa  236  1.0000000000000001e-60  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  35.31 
 
 
521 aa  234  4.0000000000000004e-60  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  37.87 
 
 
525 aa  233  7.000000000000001e-60  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_004347  SO_2366  response regulator  37.05 
 
 
525 aa  231  2e-59  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.78 
 
 
746 aa  231  3e-59  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  41.58 
 
 
531 aa  228  2e-58  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  39.5 
 
 
741 aa  225  1e-57  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  39.03 
 
 
531 aa  224  3e-57  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  35.66 
 
 
536 aa  223  9.999999999999999e-57  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  36.83 
 
 
767 aa  219  7e-56  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  33.49 
 
 
529 aa  218  2.9999999999999998e-55  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  35.49 
 
 
515 aa  215  9.999999999999999e-55  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  35.61 
 
 
513 aa  216  9.999999999999999e-55  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  35.31 
 
 
513 aa  214  2.9999999999999995e-54  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  35.31 
 
 
513 aa  214  2.9999999999999995e-54  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  35.31 
 
 
513 aa  214  3.9999999999999995e-54  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  35.07 
 
 
523 aa  213  1e-53  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  36.14 
 
 
520 aa  211  3e-53  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  37.19 
 
 
740 aa  209  9e-53  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  37.46 
 
 
527 aa  208  2e-52  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  39.76 
 
 
766 aa  207  4e-52  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.8 
 
 
763 aa  202  9.999999999999999e-51  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.39 
 
 
746 aa  201  3.9999999999999996e-50  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01215  Response regulator  33.9 
 
 
509 aa  189  2e-46  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.27 
 
 
758 aa  187  4e-46  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  37.23 
 
 
437 aa  187  4e-46  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  35.71 
 
 
522 aa  186  9e-46  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.5 
 
 
744 aa  180  7e-44  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.8 
 
 
744 aa  179  8e-44  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.18 
 
 
744 aa  179  1e-43  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.48 
 
 
744 aa  179  1e-43  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  29.67 
 
 
525 aa  176  9.999999999999999e-43  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  34.2 
 
 
512 aa  176  9.999999999999999e-43  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  35.93 
 
 
743 aa  175  1.9999999999999998e-42  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  37.11 
 
 
508 aa  175  2.9999999999999996e-42  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_013061  Phep_2551  ATP-binding region ATPase domain protein  40.71 
 
 
398 aa  168  2.9999999999999998e-40  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  43.38 
 
 
519 aa  166  1.0000000000000001e-39  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  52.07 
 
 
440 aa  165  2.0000000000000002e-39  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_013501  Rmar_1190  histidine kinase  38.66 
 
 
646 aa  164  3e-39  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  48.52 
 
 
398 aa  161  3e-38  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  32.56 
 
 
733 aa  160  5e-38  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007901  Rfer_4413  response regulator receiver sensor signal transduction histidine kinase  25.35 
 
 
565 aa  157  7e-37  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_1483  integral membrane sensor signal transduction histidine kinase  38.87 
 
 
477 aa  154  2.9999999999999998e-36  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1802  GAF sensor signal transduction histidine kinase  37.24 
 
 
456 aa  151  3e-35  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0239  PAS/PAC sensor hybrid histidine kinase  28.72 
 
 
565 aa  148  3e-34  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1898  integral membrane sensor signal transduction histidine kinase  33.99 
 
 
546 aa  147  3e-34  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  43.06 
 
 
432 aa  147  4.0000000000000006e-34  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_2689  multi-sensor signal transduction histidine kinase  31.34 
 
 
646 aa  147  7.0000000000000006e-34  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.119288 
 
 
-
 
NC_010717  PXO_03078  sensor histidine kinase  36.12 
 
 
678 aa  145  2e-33  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  30.21 
 
 
471 aa  145  2e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_2108  multisensor signal transduction histidine kinase  27.45 
 
 
492 aa  144  4e-33  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013385  Adeg_1027  integral membrane sensor signal transduction histidine kinase  32.3 
 
 
473 aa  142  9.999999999999999e-33  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  36.25 
 
 
378 aa  142  9.999999999999999e-33  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_007413  Ava_1716  PAS/PAC sensor hybrid histidine kinase  34.03 
 
 
628 aa  141  3.9999999999999997e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  0.805197  normal 
 
 
-
 
NC_010087  Bmul_5450  multi-sensor hybrid histidine kinase  36.05 
 
 
799 aa  141  3.9999999999999997e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00754974 
 
 
-
 
NC_011071  Smal_0447  PAS/PAC sensor hybrid histidine kinase  36.24 
 
 
662 aa  140  7.999999999999999e-32  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4245  multi-sensor hybrid histidine kinase  36.52 
 
 
654 aa  139  1e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2880  multi-sensor signal transduction histidine kinase  43.37 
 
 
576 aa  139  1e-31  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0401  response regulator receiver sensor signal transduction histidine kinase  43.4 
 
 
415 aa  139  1e-31  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.653943 
 
 
-
 
NC_010513  Xfasm12_1997  histidine kinase/response regulator hybrid protein  35.11 
 
 
558 aa  139  2e-31  Xylella fastidiosa M12  Bacteria  normal  0.947527  n/a   
 
 
-
 
NC_010577  XfasM23_1922  PAS/PAC sensor signal transduction histidine kinase  35.11 
 
 
558 aa  139  2e-31  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0134  histidine kinase  36.1 
 
 
547 aa  139  2e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1191  periplasmic sensor hybrid histidine kinase  31.78 
 
 
697 aa  136  9e-31  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.604254  n/a   
 
 
-
 
NC_008784  BMASAVP1_1000  sensory box histidine kinase/response regulator  36.21 
 
 
771 aa  135  9.999999999999999e-31  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1979  sensory box histidine kinase/response regulator  36.21 
 
 
771 aa  135  9.999999999999999e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0314  Signal transduction histidine kinase (STHK) with CheB and CheR activity  34.05 
 
 
1399 aa  136  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009079  BMA10247_A2264  sensory box histidine kinase/response regulator  36.21 
 
 
771 aa  135  9.999999999999999e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  0.87596  n/a   
 
 
-
 
NC_007413  Ava_4701  multi-sensor hybrid histidine kinase  31.31 
 
 
1274 aa  136  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0613664  normal  0.609464 
 
 
-
 
NC_013204  Elen_1010  histidine kinase  31.5 
 
 
572 aa  136  9.999999999999999e-31  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.0817847 
 
 
-
 
NC_010681  Bphyt_1282  PAS/PAC sensor signal transduction histidine kinase  36.61 
 
 
548 aa  136  9.999999999999999e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.153514  normal  0.0403413 
 
 
-
 
NC_009075  BURPS668_A3159  sensory box histidine kinase/response regulator  35.74 
 
 
771 aa  135  1.9999999999999998e-30  Burkholderia pseudomallei 668  Bacteria  normal  0.882119  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1379  sensory box histidine kinase/response regulator  36.21 
 
 
769 aa  135  1.9999999999999998e-30  Burkholderia pseudomallei 1710b  Bacteria  normal  0.364148  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3030  sensory box histidine kinase/response regulator  35.74 
 
 
771 aa  135  1.9999999999999998e-30  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
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