| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3111 |
|---|
| Symbol | |
|---|
| ID | 4605358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3686578 |
|---|
| End bp | 3687564 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639782527 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_928983 |
|---|
| Protein GI | 119776243 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0637882 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGACC TCAAGCCCCT CATTCTGGTG GTAGACGACG AAGCGGCCAA CTTAAGGGTG
CTCAAACAGA TACTGCAGGA TGAGTATCAG CTGAGCTTTG CCAAAAGTGG CCAGGAGGCG
CTGCGCCTGG TGGGGCAAAA GCGGCCTGAT CTTATCCTGC TTGATATCAT GATGCCCGAT
ATGACAGGGC TGGATCTGTG CAAACTGCTC AAGGCCAATC CCCAGAGCGC CGGTATTCCG
GTGATTTTTG TCACCGCCCT CAACGACGAG GCCGACGAGG CCACGGGCTT TGCCGCCGGT
GCAGTGGATT ACATCACCAA GCCGGTGTCC AGCGCCATTG TCAGGGCACG GGTGCGGACT
CACCTGTCGC TGGTGCAGGC CGAAGAGCTA AAGGTTACCC GGCTTAAAAT CATCCAGCGC
CTCGGCCGCG CTGCCGAATT CAAAGATAAT GAAACCGGCA TGCACGTCAT GCGCATGAGC
CACTATGCCA AGGTGCTCGC CCGTGCCTAT GGCCTTGGCG AAAGTCATGC CGACATGTTG
CTGCACGCAG CACCCATGCA CGATATAGGT AAAATCGGCA TCGCAGACCA CATACTGCTC
AAGCCCGGCA AACTCACCGA AGAAGAGTTC GAGGTGATGA AAACCCATCC GCAAATCGGC
GCGGATATCA TAGGGGAAGA TGACTCACTG CTGATGCAAA TGGCCCGCAC CGTGGCCCTC
ACCCACCACG AAAAATGGGA CGGCAGCGGC TACCCCAGGG GTATTGCCGG TGAGGCCATT
CCGGTAGAGG GGCGCATTGT TGCCATCGCC GATGTGTTCG ATGCCCTCAC CAGCGACCGC
CCCTACAAAA AGGCCTGGAG CATAGAAGAC ACACTACGCC TGATGCGGGA GCAAAAAGGC
CGCCACTTCG AGCCCCTGCT GGTGGAGCTG CTGGAGCAAA ACCTCGACAA GATCCTCGAC
ATCAAACAAA CCTTTGTGGA CGAATAG
|
|---|
| Protein sequence | MQDLKPLILV VDDEAANLRV LKQILQDEYQ LSFAKSGQEA LRLVGQKRPD LILLDIMMPD
MTGLDLCKLL KANPQSAGIP VIFVTALNDE ADEATGFAAG AVDYITKPVS SAIVRARVRT
HLSLVQAEEL KVTRLKIIQR LGRAAEFKDN ETGMHVMRMS HYAKVLARAY GLGESHADML
LHAAPMHDIG KIGIADHILL KPGKLTEEEF EVMKTHPQIG ADIIGEDDSL LMQMARTVAL
THHEKWDGSG YPRGIAGEAI PVEGRIVAIA DVFDALTSDR PYKKAWSIED TLRLMREQKG
RHFEPLLVEL LEQNLDKILD IKQTFVDE
|
|---|
| |