More than 300 homologs were found in PanDaTox collection
for query gene BBta_0711 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
581 aa  1178    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3058  phage head-tail adaptor, putative  82.38 
 
 
580 aa  931    Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  62.2 
 
 
584 aa  684    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  61.13 
 
 
593 aa  689    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  81.07 
 
 
578 aa  931    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  82.79 
 
 
582 aa  979    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  61.98 
 
 
584 aa  683    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  83.21 
 
 
550 aa  900    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  82.35 
 
 
580 aa  962    Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  81.62 
 
 
579 aa  957    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  63.59 
 
 
584 aa  684    Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_010172  Mext_2117  histidine kinase  61.13 
 
 
631 aa  689    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  59.17 
 
 
613 aa  679    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  43.34 
 
 
522 aa  263  1e-68  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  45.13 
 
 
337 aa  248  2e-64  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02571  response regulator  43.1 
 
 
521 aa  244  3.9999999999999997e-63  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  40.95 
 
 
517 aa  243  7e-63  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  41.52 
 
 
518 aa  242  1e-62  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  39.88 
 
 
531 aa  232  1e-59  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  39.18 
 
 
741 aa  231  2e-59  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  37.29 
 
 
523 aa  231  3e-59  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  37.69 
 
 
524 aa  231  3e-59  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  39.76 
 
 
746 aa  230  6e-59  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_004347  SO_2366  response regulator  38.19 
 
 
525 aa  228  2e-58  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  38.34 
 
 
523 aa  227  4e-58  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  38.34 
 
 
523 aa  227  5.0000000000000005e-58  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  38.34 
 
 
523 aa  226  1e-57  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  38.34 
 
 
523 aa  223  7e-57  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  38.34 
 
 
523 aa  223  7e-57  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  32.69 
 
 
526 aa  223  8e-57  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  38.14 
 
 
525 aa  221  3e-56  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  38.14 
 
 
525 aa  221  3e-56  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  38.26 
 
 
531 aa  220  6e-56  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  37.58 
 
 
525 aa  219  7.999999999999999e-56  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  36.86 
 
 
767 aa  216  9e-55  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  34.59 
 
 
521 aa  215  1.9999999999999998e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  38.38 
 
 
529 aa  214  4.9999999999999996e-54  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  34.4 
 
 
520 aa  213  7.999999999999999e-54  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  36.39 
 
 
536 aa  212  2e-53  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  33.85 
 
 
515 aa  206  7e-52  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  32.68 
 
 
523 aa  205  2e-51  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  37.03 
 
 
527 aa  204  5e-51  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  37.89 
 
 
740 aa  202  9.999999999999999e-51  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  32.58 
 
 
513 aa  199  7.999999999999999e-50  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  32.58 
 
 
513 aa  199  7.999999999999999e-50  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  32.58 
 
 
513 aa  199  9e-50  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  33.43 
 
 
513 aa  199  1.0000000000000001e-49  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.15 
 
 
746 aa  198  2.0000000000000003e-49  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.5 
 
 
766 aa  197  5.000000000000001e-49  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01215  Response regulator  35 
 
 
509 aa  195  2e-48  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  35.97 
 
 
522 aa  192  1e-47  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.12 
 
 
763 aa  189  1e-46  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  31.82 
 
 
525 aa  185  2.0000000000000003e-45  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.71 
 
 
758 aa  185  2.0000000000000003e-45  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  37.5 
 
 
508 aa  182  1e-44  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  36.33 
 
 
437 aa  182  1e-44  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  35.69 
 
 
743 aa  174  2.9999999999999996e-42  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.65 
 
 
744 aa  174  3.9999999999999995e-42  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.65 
 
 
744 aa  174  5e-42  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.49 
 
 
744 aa  173  1e-41  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.65 
 
 
744 aa  172  1e-41  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  34.11 
 
 
512 aa  168  2.9999999999999998e-40  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  51.48 
 
 
440 aa  163  7e-39  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  33.33 
 
 
733 aa  162  1e-38  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1190  histidine kinase  38.98 
 
 
646 aa  162  1e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2551  ATP-binding region ATPase domain protein  40.18 
 
 
398 aa  162  2e-38  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2880  multi-sensor signal transduction histidine kinase  29.55 
 
 
576 aa  161  3e-38  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1483  integral membrane sensor signal transduction histidine kinase  39.58 
 
 
477 aa  159  2e-37  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  48.21 
 
 
398 aa  158  3e-37  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  42.65 
 
 
519 aa  155  1e-36  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_013385  Adeg_1898  integral membrane sensor signal transduction histidine kinase  35.5 
 
 
546 aa  154  5.9999999999999996e-36  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  44.44 
 
 
432 aa  152  2e-35  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1802  GAF sensor signal transduction histidine kinase  37.02 
 
 
456 aa  150  8e-35  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  36.8 
 
 
378 aa  146  1e-33  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_011831  Cagg_0838  GAF sensor signal transduction histidine kinase  38.46 
 
 
461 aa  145  1e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007901  Rfer_4413  response regulator receiver sensor signal transduction histidine kinase  24.36 
 
 
565 aa  145  2e-33  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_1369  GAF sensor signal transduction histidine kinase  34.55 
 
 
767 aa  144  6e-33  Thauera sp. MZ1T  Bacteria  normal  0.0713189  n/a   
 
 
-
 
NC_007796  Mhun_2689  multi-sensor signal transduction histidine kinase  32.22 
 
 
646 aa  142  1.9999999999999998e-32  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.119288 
 
 
-
 
NC_010717  PXO_03078  sensor histidine kinase  37.12 
 
 
678 aa  141  3e-32  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1640  PAS/PAC sensor hybrid histidine kinase  37.39 
 
 
672 aa  141  3e-32  Burkholderia sp. 383  Bacteria  normal  0.934605  normal  0.169753 
 
 
-
 
NC_010086  Bmul_4245  multi-sensor hybrid histidine kinase  36.96 
 
 
654 aa  141  3e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3552  Cache sensor hybrid histidine kinase  34.83 
 
 
970 aa  141  3.9999999999999997e-32  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3793  multi-sensor hybrid histidine kinase  37.83 
 
 
664 aa  140  7e-32  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.191798 
 
 
-
 
NC_008061  Bcen_3990  multi-sensor hybrid histidine kinase  38.26 
 
 
666 aa  140  7.999999999999999e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4377  multi-sensor hybrid histidine kinase  38.26 
 
 
666 aa  140  7.999999999999999e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_2108  multisensor signal transduction histidine kinase  28.88 
 
 
492 aa  140  8.999999999999999e-32  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4258  multi-sensor hybrid histidine kinase  37.83 
 
 
663 aa  139  1e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.267585 
 
 
-
 
NC_009972  Haur_4240  multi-sensor hybrid histidine kinase  35.16 
 
 
1064 aa  138  2e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4616  GAF sensor hybrid histidine kinase  35.54 
 
 
701 aa  139  2e-31  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.524944 
 
 
-
 
NC_007604  Synpcc7942_1816  periplasmic sensor hybrid histidine kinase  33.33 
 
 
977 aa  137  4e-31  Synechococcus elongatus PCC 7942  Bacteria  normal  0.218789  normal  0.39116 
 
 
-
 
NC_010515  Bcenmc03_5978  PAS/PAC sensor hybrid histidine kinase  37.83 
 
 
656 aa  137  4e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.410257  normal 
 
 
-
 
NC_014212  Mesil_0932  multi-sensor signal transduction histidine kinase  35.96 
 
 
827 aa  137  8e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.202098 
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  35.62 
 
 
500 aa  137  8e-31  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011661  Dtur_0748  GAF sensor signal transduction histidine kinase  36 
 
 
815 aa  136  9e-31  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0239  PAS/PAC sensor hybrid histidine kinase  29.04 
 
 
565 aa  136  9e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3937  GAF sensor signal transduction histidine kinase  35.66 
 
 
701 aa  136  9.999999999999999e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4068  histidine kinase  34.62 
 
 
594 aa  135  1.9999999999999998e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  0.379101  n/a   
 
 
-
 
NC_004578  PSPTO_1902  bacteriophytochrome histidine kinase  33.89 
 
 
745 aa  134  3e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.333534  n/a   
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  41.67 
 
 
471 aa  135  3e-30  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1933  ATPase domain-containing protein  37.02 
 
 
535 aa  135  3e-30  Nocardioides sp. JS614  Bacteria  normal  0.493372  n/a   
 
 
-
 
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