| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03585 |
|---|
| Symbol | |
|---|
| ID | 6778361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3871161 |
|---|
| End bp | 3873386 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642757038 |
|---|
| Product | response regulator/GGDEF/EAL domain protein |
|---|
| Protein accession | YP_002127871 |
|---|
| Protein GI | 196158382 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCAA TGGATTACGA TAACGACGAA TTGATTTTTT TAGATGACGA TGGTTCAGTT
GAAGAGCAAG TTCTCTTGGG CAAAGATTGG AACATTCTCA TTGTTGACGA TGATGAAGAG
ATTCACACGG TTACGCGCCT TGCGCTGTCT GACCTTGTCG TAAACGATCG CAAATTAAAC
TTTATCCACG CTTATTCAGC AAAGCAGGCT AAAGCGTTAC TTCATGAATA TAGCAACAGT
ATTGCTATTA TCTTGCTCGA CGTGGTCATG GAAACCGATG ACGCTGGTTT CGATGTAGTT
AAGTACATCC GTGAGGATAT GAAGTTGTTC GAGCCGAGAA TAATCCTGCG CACGGGTCAG
CCAGGATATG CGCCCGAAGA GCAAGTCATA AAAGTCTACG ATATCAATGA CTATAAAACC
AAGACAGAGC TCACTCGAGC AAAACTACTA ACAACTATTA TCTCTTCTCT GCGTTCTTAT
CAACAAATTA TTACCATTAG CCAAAGCCGC GCAGGCTTGG AGAAAATTAT TACCTCCTCG
GCTAACCTGT TTGAAGAACA TTCCGTAAAA GAATTCTGCG AAGGTGTCGT TACTCAAATA
AGTTCTTTAA TTGGGCTCGA TTCAGAAGGC TTGTTATGTG CAAGAGCAGG TTCATTGCTC
GACAGGGATG ATTCTGAAGT TTACGTTTTA GGTGCAGCGG GTGAGTATGC TAAGTTTATT
AATCATCCAG TAGCCGACGT TAAAAATATA GAAATAGAAG AAAACGTCGT TCGCTGTTTA
CGGCTTAAAA AGCATATTTT CGAGCCAAGC TGCTCGGTAC TTTATATCAG TAGAGCGGGC
TTTGAGGCTG CAGTATACGT GCGCCAGACT CATGAAATAA GCGAGCTTGA CAAGCATTTG
CTGGAAGTTT TCTTATCGAG CATTTCCGTG GGATATGAAA ACGTAAACCT TTTCCACGAG
CTAAGAAATG CAGCGTTTCG TGACTGGCTA ACGCGCCTTC CAAATCGCAA CGAATTTATT
AACATGTTGG ATAAGCCCCA CCTATTCGCC GGGGAAAACT GCAGTGTGGC CCTTATCGAT
GTTAATCACT TTTCAGACGT TAATGACGGG TTAGGCCAGG AAGTGGGAAA CGAATTACTG
CGGGCTATTA GTGGTCGTTT TCAAACTTCT TTCGATGGAT TGGTTAAAAA AGGCCGTATT
GGTGCGGACG TATTTGGGCT GATTGGTCCC GATGAATTGG TTTGTCCAGA AGCGATTAAC
GCTATCTTTC AATCGTCTTT TAAAGTCGGC GATCACACAC TTCCAGTAAA CGTGACACTT
GGATTTTGTA AGTTAGATAA CAAACGCAAT ATTGGTATTG AAATTTTAAA GCGTACCAAT
ATTGCCTTAA ACCGCGCTAA GAAAAACCTT ACAGATAACT TTGAATATTA CGCGAAAGAC
ATTGAAGACC AGACAACCTG GCGTCTCGAT ATGATCCGTC GTCTTAGAAG TGATTTCGCT
GCACGAAAGC TAGAGCTTTG GTTTCAACCG CAAATAGATT TACTAAACGA AAAAGTAGTG
GGTATGGAAG GTTTACTGCG GTGGCCTGAT GGCGATGGTG GGTATATCTC ACCGGCGATC
TTTGTACCCC TCGCAGAGTA TTCTGGCCTC ATCGTAGATA TTGGTGAATG GGTATTAGAA
GAGTCGTGCC GCCGTCTTCA AGCATTGAAA GAAAAAAACT ATGGCCACCT ACGCGTAGCA
GTCAACATTT CTATTCCGCA ATTCCGAGAT AGGTTATTTG TAGAAAAGGT AAAGCACGCC
CTGTCAAATG CTAACTGTGA TCCCAGCCGT CTAGAGCTGG AAATTACAGA GAGTGTTGTT
ATGGATGAGC CTCAAATAGT GATTGATGCA TTACGCTCGC TAAAAGAATT TGGGGTGAAA
ATAGCGATAG ATGACTTCGG CACCGGTTTT TCATCAATGA GTTACTTGCA GCAGTTACCT
CTAGACCGAC TGAAGGTAGA CCGCTCTTTT GTAAAAGATA TTAAGCCAGG TGCGAGTGCA
GTGCTGGCTG AAACAATTGT TACCTTAGGT AATAAACTAG GCTTATTAAC CATTGCGGAA
GGCGTGGAAA AAAGAGAGCA GGCTAGCTAC ATGATTAAGT TAGGCTGTGA TGAGGCGCAA
GGTTACCTTT ACGCGAAACC CATGCCGTTT GACGCGCTTT TAGCGTTTTT AGAGAACCAC
GATTAG
|
|---|
| Protein sequence | MSAMDYDNDE LIFLDDDGSV EEQVLLGKDW NILIVDDDEE IHTVTRLALS DLVVNDRKLN
FIHAYSAKQA KALLHEYSNS IAIILLDVVM ETDDAGFDVV KYIREDMKLF EPRIILRTGQ
PGYAPEEQVI KVYDINDYKT KTELTRAKLL TTIISSLRSY QQIITISQSR AGLEKIITSS
ANLFEEHSVK EFCEGVVTQI SSLIGLDSEG LLCARAGSLL DRDDSEVYVL GAAGEYAKFI
NHPVADVKNI EIEENVVRCL RLKKHIFEPS CSVLYISRAG FEAAVYVRQT HEISELDKHL
LEVFLSSISV GYENVNLFHE LRNAAFRDWL TRLPNRNEFI NMLDKPHLFA GENCSVALID
VNHFSDVNDG LGQEVGNELL RAISGRFQTS FDGLVKKGRI GADVFGLIGP DELVCPEAIN
AIFQSSFKVG DHTLPVNVTL GFCKLDNKRN IGIEILKRTN IALNRAKKNL TDNFEYYAKD
IEDQTTWRLD MIRRLRSDFA ARKLELWFQP QIDLLNEKVV GMEGLLRWPD GDGGYISPAI
FVPLAEYSGL IVDIGEWVLE ESCRRLQALK EKNYGHLRVA VNISIPQFRD RLFVEKVKHA
LSNANCDPSR LELEITESVV MDEPQIVIDA LRSLKEFGVK IAIDDFGTGF SSMSYLQQLP
LDRLKVDRSF VKDIKPGASA VLAETIVTLG NKLGLLTIAE GVEKREQASY MIKLGCDEAQ
GYLYAKPMPF DALLAFLENH D
|
|---|
| |