More than 300 homologs were found in PanDaTox collection
for query gene Nwi_3058 on replicon NC_007406
Organism: Nitrobacter winogradskyi Nb-255



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  82.59 
 
 
579 aa  958    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  60.71 
 
 
593 aa  670    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  82.38 
 
 
581 aa  956    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3058  phage head-tail adaptor, putative  100 
 
 
580 aa  1168    Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  60.28 
 
 
584 aa  654    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  80.31 
 
 
578 aa  926    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  82.73 
 
 
582 aa  977    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2117  histidine kinase  60.71 
 
 
631 aa  669    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  62 
 
 
584 aa  677    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  82.85 
 
 
550 aa  894    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  89.79 
 
 
580 aa  1053    Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  58.81 
 
 
613 aa  660    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  62 
 
 
584 aa  663    Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  41.1 
 
 
522 aa  244  3.9999999999999997e-63  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  45.45 
 
 
337 aa  243  6e-63  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  39.31 
 
 
741 aa  239  1e-61  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  39.39 
 
 
517 aa  239  1e-61  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  38.35 
 
 
523 aa  238  2e-61  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  40.06 
 
 
518 aa  238  2e-61  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  40.45 
 
 
523 aa  235  1.0000000000000001e-60  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  40.45 
 
 
523 aa  235  2.0000000000000002e-60  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_011138  MADE_02571  response regulator  42.09 
 
 
521 aa  235  2.0000000000000002e-60  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  40.45 
 
 
523 aa  233  6e-60  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_004347  SO_2366  response regulator  38.1 
 
 
525 aa  233  1e-59  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  39.81 
 
 
523 aa  232  2e-59  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  39.81 
 
 
523 aa  232  2e-59  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  33.7 
 
 
526 aa  228  2e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  38.83 
 
 
525 aa  226  6e-58  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  38.83 
 
 
525 aa  226  6e-58  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  38.14 
 
 
531 aa  226  7e-58  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.44 
 
 
746 aa  226  1e-57  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  36.34 
 
 
524 aa  225  1e-57  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  38.19 
 
 
525 aa  224  4e-57  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  38.49 
 
 
529 aa  223  8e-57  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  34.58 
 
 
521 aa  219  1e-55  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  36.86 
 
 
767 aa  219  1e-55  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  39.71 
 
 
531 aa  217  4e-55  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  34.38 
 
 
520 aa  215  1.9999999999999998e-54  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  36.16 
 
 
536 aa  213  7.999999999999999e-54  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  36.14 
 
 
515 aa  212  1e-53  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  36.96 
 
 
527 aa  211  2e-53  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  38.12 
 
 
740 aa  208  2e-52  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.76 
 
 
763 aa  207  4e-52  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  34.17 
 
 
513 aa  205  2e-51  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  34.17 
 
 
513 aa  205  2e-51  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  34.17 
 
 
513 aa  205  2e-51  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  34.17 
 
 
513 aa  205  2e-51  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.73 
 
 
766 aa  196  9e-49  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  32.87 
 
 
523 aa  194  3e-48  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.21 
 
 
746 aa  194  5e-48  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01215  Response regulator  36.07 
 
 
509 aa  188  2e-46  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  38.22 
 
 
437 aa  185  2.0000000000000003e-45  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  35.53 
 
 
522 aa  184  3e-45  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.49 
 
 
758 aa  178  2e-43  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  30.91 
 
 
525 aa  176  9.999999999999999e-43  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  36.05 
 
 
508 aa  172  1e-41  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  35.12 
 
 
512 aa  171  3e-41  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  34.09 
 
 
743 aa  166  1.0000000000000001e-39  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2551  ATP-binding region ATPase domain protein  40.09 
 
 
398 aa  165  2.0000000000000002e-39  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  56.94 
 
 
440 aa  162  1e-38  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_013501  Rmar_1190  histidine kinase  37.65 
 
 
646 aa  163  1e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.56 
 
 
744 aa  161  3e-38  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.9 
 
 
744 aa  161  4e-38  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.56 
 
 
744 aa  160  6e-38  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.56 
 
 
744 aa  160  7e-38  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  43.32 
 
 
519 aa  159  2e-37  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  47.93 
 
 
398 aa  156  1e-36  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_010571  Oter_1483  integral membrane sensor signal transduction histidine kinase  38.4 
 
 
477 aa  152  2e-35  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  43.06 
 
 
432 aa  150  6e-35  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_007901  Rfer_4413  response regulator receiver sensor signal transduction histidine kinase  26 
 
 
565 aa  147  7.0000000000000006e-34  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  30.27 
 
 
471 aa  145  2e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  35.6 
 
 
378 aa  144  3e-33  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  30.92 
 
 
733 aa  144  4e-33  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1898  integral membrane sensor signal transduction histidine kinase  33.7 
 
 
546 aa  143  9.999999999999999e-33  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2880  multi-sensor signal transduction histidine kinase  45.78 
 
 
576 aa  142  9.999999999999999e-33  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4245  multi-sensor hybrid histidine kinase  36.52 
 
 
654 aa  140  7e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2689  multi-sensor signal transduction histidine kinase  31.6 
 
 
646 aa  140  7.999999999999999e-32  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.119288 
 
 
-
 
NC_008699  Noca_4317  ATPase domain-containing protein  36.71 
 
 
600 aa  140  8.999999999999999e-32  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5450  multi-sensor hybrid histidine kinase  36.36 
 
 
799 aa  139  1e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00754974 
 
 
-
 
NC_008699  Noca_4318  ATPase domain-containing protein  38.7 
 
 
593 aa  139  1e-31  Nocardioides sp. JS614  Bacteria  normal  0.819924  n/a   
 
 
-
 
NC_011662  Tmz1t_1369  GAF sensor signal transduction histidine kinase  32.45 
 
 
767 aa  138  3.0000000000000003e-31  Thauera sp. MZ1T  Bacteria  normal  0.0713189  n/a   
 
 
-
 
NC_008340  Mlg_1802  GAF sensor signal transduction histidine kinase  36.02 
 
 
456 aa  137  5e-31  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03078  sensor histidine kinase  34.51 
 
 
678 aa  136  9.999999999999999e-31  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0401  response regulator receiver sensor signal transduction histidine kinase  43.51 
 
 
415 aa  136  9.999999999999999e-31  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.653943 
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  35.53 
 
 
500 aa  135  1.9999999999999998e-30  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_0723  histidine kinase  34.05 
 
 
406 aa  135  1.9999999999999998e-30  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0849  histidine kinase  35.02 
 
 
422 aa  134  3.9999999999999996e-30  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009972  Haur_4240  multi-sensor hybrid histidine kinase  33.85 
 
 
1064 aa  131  4.0000000000000003e-29  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1052  sensory transduction histidine kinase  30.33 
 
 
1046 aa  129  1.0000000000000001e-28  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1522  response regulator receiver sensor signal transduction histidine kinase  31.6 
 
 
389 aa  129  1.0000000000000001e-28  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1495  response regulator receiver sensor signal transduction histidine kinase  31.6 
 
 
389 aa  129  1.0000000000000001e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_4124  response regulator receiver protein  44.7 
 
 
172 aa  129  1.0000000000000001e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013501  Rmar_2670  histidine kinase  30.88 
 
 
352 aa  129  2.0000000000000002e-28  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3600  histidine kinase  33.33 
 
 
548 aa  128  2.0000000000000002e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.94225  normal 
 
 
-
 
NC_008391  Bamb_3793  multi-sensor hybrid histidine kinase  35.65 
 
 
664 aa  129  2.0000000000000002e-28  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.191798 
 
 
-
 
NC_011831  Cagg_0838  GAF sensor signal transduction histidine kinase  35.06 
 
 
461 aa  128  3e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0134  histidine kinase  35.48 
 
 
547 aa  128  3e-28  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4258  multi-sensor hybrid histidine kinase  35.65 
 
 
663 aa  128  4.0000000000000003e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.267585 
 
 
-
 
NC_009767  Rcas_3032  integral membrane sensor signal transduction histidine kinase  34.48 
 
 
509 aa  127  5e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.446581  normal 
 
 
-
 
NC_009972  Haur_3937  GAF sensor signal transduction histidine kinase  34.43 
 
 
701 aa  127  6e-28  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
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