Gene Rcas_3032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3032 
Symbol 
ID5540528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3929299 
End bp3930828 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content61% 
IMG OID640895152 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001433105 
Protein GI156742976 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR01386] heavy metal sensor kinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.446581 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAATAC GCACACGCCT GACACTTTCA TACGTCAGTT TTTTTGCGAT TGCGCTGCTG 
ACGCTGCACA CCGGATTGTA CCTCATCGTG CGCGGCGTGT TGTTGAACAG CGTCGATAAC
GAACTGCGTC TGGGGGTCGA GGTACTGCGC CGCGGATTTG CCGAGAGCAA CCAGACACCC
TACGGTTACT TCCGCGACGA TCAACTGCGC GCCATTTTGT TGCGCCAGCC GCCGGTGCGC
GACTTTGAGG CGACCAGTCT GTACGTTCAG TTTTTCGACG CCGACGGCGA TCTCGTTGGT
CGTTCACCGA ACATCGGCGA AGGAGACCTG GCGGCGGCAC TGACGCTCGA CGAACAACGG
TTCGCCAGGG CGCTCGACGG AGCGGAGCAG ATTACGACCG TCGCATACGG CAATGTGCAG
ATACGCGAGT TGATGGCGCC ACTCCGCTTT TTCAACCCGG TCACCCGCCG CGAGGAGACC
GTCGGCGTGT TGCAGGTTGC ACGGTCGATG GCGGAAATTC AGTACGCGCT GCGCCTTCTC
TTTTATGCGC TGACGGTTGG CGGCGTGGTG GTGCTGCTGG CGGCGGCGCG CGGCGGCGCG
TGGCTGACGC GCGCCGCATT TCGGCCAATT GATGAAATTG CGCAGACAGC GCAGAGTATC
GTGCGCGCCG AGGACCTGAG TCGCCGCATC CCCGTTCCCC CCGCCGCCGA TGAATTGCAG
CGCCTGACAA TTACGGTCAA CGATCTGCTG GCGCGGTTGG AAGAACTGTT CAACCATCAG
CGCCGTTTTA TTGCCGATGT GTCGCACGAA CTGCGCACAC CGCTGACGGC GATGCAGGGC
AACCTCGAAG TGCTGGCGCG TGGCGCAGCG CGCGATCCGC AGTTGCTGAA CGAGTCGCTC
GATGATATGC GACGCGAAGT TGCCCGCCTG ATCCGCATGG TCAACGACCT GCTCCTGTTG
GCGCGCAGCG ACGCCGGTAT TCAGATCCGG CGCGATCCGG TGGAACTTGA TACACTCTTG
CTTGAAACCC ACCGCGAACT CCGACCGCTG GCAGGACAGG TGCAGTTGCG CATTGGCGAA
GAGGATCAGG CGGTGGTCAT CGGCGACCGC GACCGTATCA AGCAGGCGCT CCTGAATCTT
GGCATTAACG CCATTCAGCA CACGCCTCCC GGCGGCGTGG TGACGTTGAG CCTCACCATC
CGCGATGGGC ATGCCGCGCT CAGCGTCGCC GACACGGGAT ATGGCATCGC GCCACAGGAT
TTGCCGCACA TCTTTGAGCG CTTCTATCGG GCGGATCAGT CGCGTTGCCA CAACGGCGGC
GGCGCAGGTT TGGGGTTGTC CATTGTTCGC TCGGTGGTCG AGGCGCATGG CGGAAAAGTA
TTGGTTTCCA GCGAACCGGG CAAAGGGAGT GTGTTTACCA TGTTACTACC CCTGGACTCT
CAACCAGAAG TGAACGACGC TGAACTGCTC CCCCCCGATT CAGAAGCTGA AGCTGCGGGT
TACGGAATGC TGAATCGGTC CATGGAATGA
 
Protein sequence
MSIRTRLTLS YVSFFAIALL TLHTGLYLIV RGVLLNSVDN ELRLGVEVLR RGFAESNQTP 
YGYFRDDQLR AILLRQPPVR DFEATSLYVQ FFDADGDLVG RSPNIGEGDL AAALTLDEQR
FARALDGAEQ ITTVAYGNVQ IRELMAPLRF FNPVTRREET VGVLQVARSM AEIQYALRLL
FYALTVGGVV VLLAAARGGA WLTRAAFRPI DEIAQTAQSI VRAEDLSRRI PVPPAADELQ
RLTITVNDLL ARLEELFNHQ RRFIADVSHE LRTPLTAMQG NLEVLARGAA RDPQLLNESL
DDMRREVARL IRMVNDLLLL ARSDAGIQIR RDPVELDTLL LETHRELRPL AGQVQLRIGE
EDQAVVIGDR DRIKQALLNL GINAIQHTPP GGVVTLSLTI RDGHAALSVA DTGYGIAPQD
LPHIFERFYR ADQSRCHNGG GAGLGLSIVR SVVEAHGGKV LVSSEPGKGS VFTMLLPLDS
QPEVNDAELL PPDSEAEAAG YGMLNRSME