| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1780 |
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| Symbol | |
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| ID | 5610813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2140151 |
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| End bp | 2141728 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932650 |
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| Product | response regulator receiver modulated metal dependent phosphohydrolase |
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| Protein accession | YP_001473519 |
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| Protein GI | 157374919 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.33037 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATGT TTATTCTGTA CAAATTATTG TCGATATGGA TATCTATGAA TAAATTTGTT
TTTCAGCCAG TTTCGCAAGT TTCTGATGCT GTTAATGACC AGCCTGTAAA ACGGTATTGG
CATATTCTTG TCGTCGATGA TGATCAAGCT GTCCATGATG TGACTCATTT GATATTGGCT
GATTTAGAGG TCTTAGGCCG GAAAATTCAA CTTCACAGTG CCTATTCCGC GGCGCAAGCT
AAGTCTTTAC TCGAGTCTGA GATCCCATTC GCCATGACCT TTGTCGATGT TGTGATGGAA
AGTGATGACG CGGGTTTACA GTTAGTAACC TGGATCAGGG AGGTGTTAAA AAACATCAGT
ATCCGGATTA TCTTACGCAC TGGTCAAGCG GGTTTAGCGC CCGAAGAGCA GGTGATCAGC
CAGTACGATA TCAATGACTA CAAAGCCAAG ACAGAACTCA CGGCAACCAA GATGATCACT
TCGGTCTATG CTGGTATTCG CGGCTTTCGT GATATTAAGA CTATCTTAAA AAGCCAAAAT
GCCTTTCAGC GTTTGATCAC ATCATCCACC AATGTGCTGA AAGTTACGCA GTTAGCAGAT
TTCGCCACTG CGGCTCTCAA TAATTTATTG ACCTTAATGA AGTTAGAGAG TTCAGCTGTT
TACATCGTCA GGCAGGAAAC CGATTTTTAT GATGATTGCC AAGAGACATA TTTAGCGTGC
ACCGGCCGAT TTGGTGAAAC ACCCCAAAGC TTAGATAGCA TCCCCGATAA TGTAAACGAT
AAGATCCAGC AAGCATTTGC AAACAAAGAT AATAAGTTTA ATCAGGAACA TTTTATTGGT
TTCTATCAGG CGTCTGCAGA GGCATCGAGT GTGCTATATA TCGAGTTTGA TTATGCCCCG
ACACACTTTA AAAGAGGCTT GATGGAGATG TATGCCACCA ATATTGCGCT GACTCTGGAA
AGCCTGGTCC AGCAGCAACA AACTCATAAG AGCCAGCGCG AACTTCTCTA TATCGTTGGT
GATGCCATCG AGGCCCGTAG TAAAGAAACG GGTTTACACG TAAAACGTGT CTCTTTGATG
TGCGAACTGC TTGCCGTTTC TCTTGGTTTA CCCCACTCAT TTGTTCAAGC GCTGAAAGTG
GCTGCACCAC TGCACGACAT TGGCAAGGTT GCCATTCCCG ATAATATTTT GCATAAGCAG
GGAACCTTGA ATTCAGGTGA GTGGGAGTTG ATGAAGAGCC ATGCTGCTGT GGGCGGTACG
CTGTTGGATA AGTCAAATTT ACCGGTAGCA AAATTAGGTT CTCGACTGGC GCGCTATCAC
CATGAAAATT GGGATGGCAG TGGTTACCCT GAAGGCCTGA GTGATACTAA TATTCCGCTT
GAAGCTCGTA TTATGTCAAT CATCGATGTG ATCGATGCAT TGGGTTCTAA CCGGAGTTAT
AAGGATGCCT GGTCGTGTGA ACAGATCCTG GCTTATATCA AGGATCAGAA GGGCAAAAAG
TTTGAACCCC TTCTGGTGGA TAAAACCGTA GAAAATTTCG ATGCTCTGAT GAAGATCAGA
CAAGAATACC CCGATTAG
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| Protein sequence | MNMFILYKLL SIWISMNKFV FQPVSQVSDA VNDQPVKRYW HILVVDDDQA VHDVTHLILA
DLEVLGRKIQ LHSAYSAAQA KSLLESEIPF AMTFVDVVME SDDAGLQLVT WIREVLKNIS
IRIILRTGQA GLAPEEQVIS QYDINDYKAK TELTATKMIT SVYAGIRGFR DIKTILKSQN
AFQRLITSST NVLKVTQLAD FATAALNNLL TLMKLESSAV YIVRQETDFY DDCQETYLAC
TGRFGETPQS LDSIPDNVND KIQQAFANKD NKFNQEHFIG FYQASAEASS VLYIEFDYAP
THFKRGLMEM YATNIALTLE SLVQQQQTHK SQRELLYIVG DAIEARSKET GLHVKRVSLM
CELLAVSLGL PHSFVQALKV AAPLHDIGKV AIPDNILHKQ GTLNSGEWEL MKSHAAVGGT
LLDKSNLPVA KLGSRLARYH HENWDGSGYP EGLSDTNIPL EARIMSIIDV IDALGSNRSY
KDAWSCEQIL AYIKDQKGKK FEPLLVDKTV ENFDALMKIR QEYPD
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