More than 300 homologs were found in PanDaTox collection
for query gene Nham_3684 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007406  Nwi_3058  phage head-tail adaptor, putative  89.79 
 
 
580 aa  1026    Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  62.52 
 
 
584 aa  676    Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  82.35 
 
 
581 aa  962    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  60.03 
 
 
584 aa  655    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  60.71 
 
 
593 aa  675    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  83.22 
 
 
578 aa  962    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2117  histidine kinase  60.54 
 
 
631 aa  673    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  83.04 
 
 
582 aa  990    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  85.22 
 
 
550 aa  922    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
580 aa  1170    Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  84.28 
 
 
579 aa  983    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  62.31 
 
 
584 aa  689    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  58.81 
 
 
613 aa  665    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  44.24 
 
 
337 aa  245  1.9999999999999999e-63  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  41.94 
 
 
522 aa  244  5e-63  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  39.34 
 
 
518 aa  243  5e-63  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  40.66 
 
 
741 aa  241  2.9999999999999997e-62  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.54 
 
 
746 aa  240  5e-62  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_011138  MADE_02571  response regulator  43.1 
 
 
521 aa  238  3e-61  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  39.05 
 
 
517 aa  235  1.0000000000000001e-60  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  38.55 
 
 
523 aa  235  2.0000000000000002e-60  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  37.5 
 
 
523 aa  235  2.0000000000000002e-60  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  38.55 
 
 
523 aa  235  2.0000000000000002e-60  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  38.55 
 
 
523 aa  233  5e-60  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_004347  SO_2366  response regulator  38.25 
 
 
525 aa  231  2e-59  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  38.55 
 
 
523 aa  231  2e-59  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  38.55 
 
 
523 aa  231  2e-59  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  34.07 
 
 
526 aa  231  3e-59  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  37.95 
 
 
525 aa  226  1e-57  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  37.95 
 
 
525 aa  226  1e-57  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  37.28 
 
 
525 aa  225  1e-57  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  37.43 
 
 
524 aa  225  2e-57  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  39.02 
 
 
531 aa  221  3e-56  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  35.06 
 
 
521 aa  219  7e-56  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  35.43 
 
 
536 aa  219  8.999999999999998e-56  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  38.3 
 
 
531 aa  219  8.999999999999998e-56  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  33.18 
 
 
529 aa  219  1e-55  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  38.1 
 
 
767 aa  219  1e-55  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  37.77 
 
 
740 aa  215  1.9999999999999998e-54  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  35.37 
 
 
515 aa  209  1e-52  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  35.14 
 
 
520 aa  208  2e-52  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  38.34 
 
 
527 aa  207  5e-52  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  34.9 
 
 
513 aa  203  8e-51  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  34.9 
 
 
513 aa  203  8e-51  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  34.9 
 
 
513 aa  202  9e-51  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  34.9 
 
 
513 aa  202  9.999999999999999e-51  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.49 
 
 
746 aa  198  2.0000000000000003e-49  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  32.32 
 
 
523 aa  198  3e-49  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  39.69 
 
 
766 aa  195  2e-48  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.17 
 
 
763 aa  195  2e-48  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  37.59 
 
 
437 aa  187  4e-46  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01215  Response regulator  34.35 
 
 
509 aa  187  4e-46  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.05 
 
 
758 aa  180  5.999999999999999e-44  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  34.49 
 
 
522 aa  179  1e-43  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  34.94 
 
 
508 aa  176  9.999999999999999e-43  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  31.35 
 
 
525 aa  174  5.999999999999999e-42  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_013501  Rmar_1190  histidine kinase  40.08 
 
 
646 aa  172  1e-41  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  35.16 
 
 
743 aa  172  2e-41  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.92 
 
 
744 aa  171  5e-41  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.6 
 
 
744 aa  170  7e-41  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.6 
 
 
744 aa  169  1e-40  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.29 
 
 
744 aa  169  1e-40  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  33.77 
 
 
512 aa  167  2.9999999999999998e-40  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_013061  Phep_2551  ATP-binding region ATPase domain protein  41.07 
 
 
398 aa  167  6.9999999999999995e-40  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  49.11 
 
 
398 aa  157  5.0000000000000005e-37  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  54.86 
 
 
440 aa  156  1e-36  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  41.47 
 
 
519 aa  152  1e-35  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_010571  Oter_1483  integral membrane sensor signal transduction histidine kinase  38.27 
 
 
477 aa  151  4e-35  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  44.44 
 
 
432 aa  150  5e-35  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1898  integral membrane sensor signal transduction histidine kinase  35.42 
 
 
546 aa  148  2.0000000000000003e-34  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007901  Rfer_4413  response regulator receiver sensor signal transduction histidine kinase  25.74 
 
 
565 aa  147  6e-34  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  30.95 
 
 
733 aa  145  3e-33  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  35.6 
 
 
378 aa  143  9.999999999999999e-33  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_011831  Cagg_0838  GAF sensor signal transduction histidine kinase  37.83 
 
 
461 aa  141  3.9999999999999997e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_5450  multi-sensor hybrid histidine kinase  36.48 
 
 
799 aa  140  7e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00754974 
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  29.93 
 
 
471 aa  140  7e-32  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_2689  multi-sensor signal transduction histidine kinase  33.7 
 
 
646 aa  139  1e-31  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.119288 
 
 
-
 
NC_008699  Noca_4318  ATPase domain-containing protein  37.39 
 
 
593 aa  139  2e-31  Nocardioides sp. JS614  Bacteria  normal  0.819924  n/a   
 
 
-
 
NC_010086  Bmul_4245  multi-sensor hybrid histidine kinase  35.65 
 
 
654 aa  137  5e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1802  GAF sensor signal transduction histidine kinase  36.29 
 
 
456 aa  137  7.000000000000001e-31  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2880  multi-sensor signal transduction histidine kinase  43.98 
 
 
576 aa  136  9.999999999999999e-31  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0401  response regulator receiver sensor signal transduction histidine kinase  39.23 
 
 
415 aa  133  7.999999999999999e-30  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.653943 
 
 
-
 
NC_008699  Noca_4317  ATPase domain-containing protein  38.14 
 
 
600 aa  133  7.999999999999999e-30  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1369  GAF sensor signal transduction histidine kinase  32.67 
 
 
767 aa  133  9e-30  Thauera sp. MZ1T  Bacteria  normal  0.0713189  n/a   
 
 
-
 
NC_013385  Adeg_1027  integral membrane sensor signal transduction histidine kinase  31.27 
 
 
473 aa  133  9e-30  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0097  PAS/PAC sensor signal transduction histidine kinase  32.34 
 
 
446 aa  132  1.0000000000000001e-29  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1131  response regulator receiver sensor signal transduction histidine kinase  36.36 
 
 
500 aa  132  2.0000000000000002e-29  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013204  Elen_1010  histidine kinase  31.27 
 
 
572 aa  131  3e-29  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.0817847 
 
 
-
 
NC_013161  Cyan8802_1522  response regulator receiver sensor signal transduction histidine kinase  30.88 
 
 
389 aa  131  3e-29  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1495  response regulator receiver sensor signal transduction histidine kinase  30.88 
 
 
389 aa  131  3e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009078  BURPS1106A_A3030  sensory box histidine kinase/response regulator  35.62 
 
 
771 aa  131  4.0000000000000003e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A3159  sensory box histidine kinase/response regulator  35.62 
 
 
771 aa  131  4.0000000000000003e-29  Burkholderia pseudomallei 668  Bacteria  normal  0.882119  n/a   
 
 
-
 
NC_011830  Dhaf_1284  histidine kinase  28.99 
 
 
560 aa  130  5.0000000000000004e-29  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0983353  n/a   
 
 
-
 
NC_007614  Nmul_A2207  multi-sensor hybrid histidine kinase  32.89 
 
 
866 aa  130  5.0000000000000004e-29  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2980  integral membrane sensor signal transduction histidine kinase  29.41 
 
 
487 aa  130  6e-29  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00000876727  n/a   
 
 
-
 
NC_011884  Cyan7425_3552  Cache sensor hybrid histidine kinase  32.71 
 
 
970 aa  129  1.0000000000000001e-28  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0239  PAS/PAC sensor hybrid histidine kinase  45.51 
 
 
565 aa  129  1.0000000000000001e-28  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1289  sensory box histidine kinase/response regulator  35.74 
 
 
772 aa  129  2.0000000000000002e-28  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A2264  sensory box histidine kinase/response regulator  35.74 
 
 
771 aa  129  2.0000000000000002e-28  Burkholderia mallei NCTC 10247  Bacteria  normal  0.87596  n/a   
 
 
-
 
NC_011831  Cagg_3142  multi-sensor hybrid histidine kinase  33.46 
 
 
1352 aa  129  2.0000000000000002e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
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