More than 300 homologs were found in PanDaTox collection
for query gene Mrad2831_3287 on replicon NC_010505
Organism: Methylobacterium radiotolerans JCM 2831



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007406  Nwi_3058  phage head-tail adaptor, putative  60.28 
 
 
580 aa  653    Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  61.98 
 
 
581 aa  702    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  74.84 
 
 
613 aa  887    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  76.6 
 
 
593 aa  885    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  60.21 
 
 
579 aa  676    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_010172  Mext_2117  histidine kinase  76.6 
 
 
631 aa  884    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  61.11 
 
 
578 aa  674    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  61.81 
 
 
582 aa  696    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  61.34 
 
 
550 aa  653    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  60.03 
 
 
580 aa  674    Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
584 aa  1171    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  74.44 
 
 
584 aa  823    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  74.87 
 
 
584 aa  806    Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  45.24 
 
 
337 aa  237  6e-61  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  40.62 
 
 
522 aa  230  7e-59  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_011138  MADE_02571  response regulator  38.51 
 
 
521 aa  224  3e-57  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  36.66 
 
 
517 aa  223  6e-57  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  39.76 
 
 
518 aa  218  2.9999999999999998e-55  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  37.58 
 
 
523 aa  217  5e-55  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  37.58 
 
 
523 aa  217  5e-55  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.14 
 
 
746 aa  216  7e-55  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  37.9 
 
 
523 aa  215  9.999999999999999e-55  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  36.42 
 
 
526 aa  214  2.9999999999999995e-54  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  36.45 
 
 
525 aa  214  2.9999999999999995e-54  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  36.34 
 
 
524 aa  213  5.999999999999999e-54  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  36.94 
 
 
523 aa  212  1e-53  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  36.94 
 
 
523 aa  213  1e-53  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  36.94 
 
 
523 aa  212  1e-53  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  36.81 
 
 
536 aa  212  2e-53  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  39.81 
 
 
531 aa  212  2e-53  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  37.06 
 
 
525 aa  211  3e-53  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  37.06 
 
 
525 aa  211  3e-53  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_004347  SO_2366  response regulator  36.45 
 
 
525 aa  211  4e-53  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  36.94 
 
 
529 aa  209  9e-53  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  37.74 
 
 
741 aa  209  1e-52  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  35.83 
 
 
521 aa  208  2e-52  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  37.26 
 
 
767 aa  205  2e-51  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  37.97 
 
 
531 aa  204  5e-51  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  35.6 
 
 
523 aa  202  9.999999999999999e-51  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.95 
 
 
746 aa  199  1.0000000000000001e-49  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  36.16 
 
 
513 aa  198  2.0000000000000003e-49  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  35.5 
 
 
513 aa  195  2e-48  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  35.5 
 
 
513 aa  195  2e-48  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  35.5 
 
 
513 aa  195  2e-48  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  39.38 
 
 
766 aa  194  4e-48  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  36.36 
 
 
527 aa  192  1e-47  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  34.56 
 
 
520 aa  191  2.9999999999999997e-47  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  38.57 
 
 
758 aa  189  1e-46  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  33.12 
 
 
515 aa  189  2e-46  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  35.83 
 
 
740 aa  187  4e-46  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  36.33 
 
 
522 aa  186  1.0000000000000001e-45  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.81 
 
 
763 aa  175  1.9999999999999998e-42  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  36.88 
 
 
437 aa  174  2.9999999999999996e-42  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01215  Response regulator  33.33 
 
 
509 aa  174  2.9999999999999996e-42  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_013061  Phep_2551  ATP-binding region ATPase domain protein  38.4 
 
 
398 aa  173  5.999999999999999e-42  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  32.9 
 
 
525 aa  173  7.999999999999999e-42  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  35.05 
 
 
508 aa  166  8e-40  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  53.85 
 
 
440 aa  164  6e-39  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_007519  Dde_0239  PAS/PAC sensor hybrid histidine kinase  31.32 
 
 
565 aa  163  9e-39  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  32.72 
 
 
512 aa  160  4e-38  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  32.9 
 
 
743 aa  160  7e-38  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007901  Rfer_4413  response regulator receiver sensor signal transduction histidine kinase  26.57 
 
 
565 aa  159  1e-37  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.99 
 
 
744 aa  154  5e-36  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.65 
 
 
744 aa  153  8e-36  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.65 
 
 
744 aa  152  1e-35  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.65 
 
 
744 aa  152  1e-35  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  50 
 
 
519 aa  152  2e-35  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_010571  Oter_1483  integral membrane sensor signal transduction histidine kinase  40.16 
 
 
477 aa  152  2e-35  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  30.69 
 
 
733 aa  148  2.0000000000000003e-34  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2880  multi-sensor signal transduction histidine kinase  45.9 
 
 
576 aa  148  3e-34  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4245  multi-sensor hybrid histidine kinase  39.33 
 
 
654 aa  144  4e-33  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  46.99 
 
 
398 aa  143  9.999999999999999e-33  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_013501  Rmar_1190  histidine kinase  36.58 
 
 
646 aa  142  1.9999999999999998e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1898  integral membrane sensor signal transduction histidine kinase  37.55 
 
 
546 aa  140  4.999999999999999e-32  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  43.15 
 
 
432 aa  138  3.0000000000000003e-31  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7014  PAS/PAC sensor hybrid histidine kinase  36.51 
 
 
781 aa  138  3.0000000000000003e-31  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3142  multi-sensor hybrid histidine kinase  35.38 
 
 
1352 aa  138  3.0000000000000003e-31  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009079  BMA10247_A2264  sensory box histidine kinase/response regulator  39.06 
 
 
771 aa  136  9e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  0.87596  n/a   
 
 
-
 
NC_006349  BMAA1979  sensory box histidine kinase/response regulator  39.06 
 
 
771 aa  136  9e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  44.44 
 
 
471 aa  136  9e-31  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1000  sensory box histidine kinase/response regulator  39.06 
 
 
771 aa  136  9e-31  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3030  sensory box histidine kinase/response regulator  39.06 
 
 
771 aa  136  9e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A3159  sensory box histidine kinase/response regulator  39.06 
 
 
771 aa  136  9e-31  Burkholderia pseudomallei 668  Bacteria  normal  0.882119  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1379  sensory box histidine kinase/response regulator  39.06 
 
 
769 aa  136  9.999999999999999e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  0.364148  n/a   
 
 
-
 
NC_008835  BMA10229_1289  sensory box histidine kinase/response regulator  39.06 
 
 
772 aa  136  9.999999999999999e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5450  multi-sensor hybrid histidine kinase  37.61 
 
 
799 aa  136  9.999999999999999e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00754974 
 
 
-
 
NC_008392  Bamb_5642  multi-sensor hybrid histidine kinase  38.2 
 
 
768 aa  135  1.9999999999999998e-30  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.203801 
 
 
-
 
NC_009767  Rcas_1113  multi-sensor signal transduction histidine kinase  37.7 
 
 
1042 aa  134  3e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0838  GAF sensor signal transduction histidine kinase  34.22 
 
 
461 aa  134  3.9999999999999996e-30  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  35.11 
 
 
378 aa  134  3.9999999999999996e-30  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_008060  Bcen_1375  multi-sensor hybrid histidine kinase  35.71 
 
 
768 aa  134  5e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.397027  n/a   
 
 
-
 
NC_008544  Bcen2424_6454  multi-sensor hybrid histidine kinase  35.71 
 
 
768 aa  134  5e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6046  PAS/PAC sensor hybrid histidine kinase  36.36 
 
 
768 aa  134  5e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.479069  normal  0.26296 
 
 
-
 
NC_010717  PXO_03078  sensor histidine kinase  35.56 
 
 
678 aa  133  9e-30  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2670  histidine kinase  34.66 
 
 
352 aa  132  1.0000000000000001e-29  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3308  sensor histidine kinase  35.97 
 
 
845 aa  133  1.0000000000000001e-29  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0563163 
 
 
-
 
NC_011830  Dhaf_1284  histidine kinase  29.39 
 
 
560 aa  133  1.0000000000000001e-29  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0983353  n/a   
 
 
-
 
NC_010557  BamMC406_6390  multi-sensor hybrid histidine kinase  37.77 
 
 
770 aa  132  1.0000000000000001e-29  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.186908 
 
 
-
 
NC_007796  Mhun_2689  multi-sensor signal transduction histidine kinase  32.72 
 
 
646 aa  133  1.0000000000000001e-29  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.119288 
 
 
-
 
NC_008752  Aave_2925  diguanylate cyclase/phosphodiesterase / diguanylate cyclase  31.27 
 
 
743 aa  132  2.0000000000000002e-29  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.249336 
 
 
-
 
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