| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1113 |
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| Symbol | |
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| ID | 5538579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1441202 |
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| End bp | 1444330 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893247 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_001431230 |
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| Protein GI | 156741101 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCGCA CGATTGAAAC CATGAATACG ACACACGCCG CCTCATCGTC AGCACAGGTG
ATCCGGCGCA TCATTGCCGG TTTTGCGCTT GCGCTCGGCT CGATCACCGT CATTGCGTTG
ATCTCCTATG GATGGACGCA ATACATCCTG GCAAACGAGC GTGATCGCTT CAATCTGCTG
GCAGCCAACA GTCTGCAGCT CATCCGCCTT CAGCAAATTG CGCTCGCAGC GGAACAGGTG
ATGGACACGT CCGATCCCGA AATAGCGGCG CAGGCGCGAG AAACGTTGAG CGCCGCCATC
GATGAGATGG CGCAGTCGCA GCAGGAACTA TCGCGCATGG TGGCAACGTT GCCGCCGGAC
GATCCACTCT GGCGCCTGTA CGCTGATCCG GCTACGGCGT TCGATGCGCG GGTGCAGGAG
TTTCTCGCAC GCGCCCGGCG CTTGCGCGAT ACTGCCCCTG ATCCGCAGCA CCCTGATCTC
CAGGTGATCC GTCGGATGGC GCTGTATGAC CTGCCGCCCC TCTTTCGCAA CGCCTCCCGT
CTATATGTCG ATGCGCGTCG CAGCCTCCTG CAAACGCTCG ACATCATGCA TGCGACCTTT
CTTGGCGTGA CACTCCTGGC ATTAGCGTTC GAGGGCATCT TCATCTTTCG CCCAATGGTG
CGAGAGGCGC GCGGCTATAT AACACAACGC GACGTAAGCG AATCTCGTTT GCGTGCGCGC
GAACGGGTGA CGCGCGCGCT CTATGACATC ACCTCAACGT CGCAACTGGA TCACTTGCAG
AAAGTGCAGG CGCTTCTTGA GATGGGATGC GACTACTTCC ACATGCCGGT CGGCGTATTG
ACTCGCATCG ATGGCGAGGA ACTCGAAATA GTCGCCGTGC GCGATCCTGG TCATCGGATG
AAGCCTGGCG AACGTTTCCC GCTTGCTGAT CGCTATTGCG CCGCCGTTCT CGACGCAGGC
GCACCGGTGA TCATTGATCA TGCATCGCAA TCCGGATGGA ATGACCATCG CTGCTATCGG
TTGACCCGCA TGGAAGCATA CATCGGCGCG CCGGTCCAGG TGCGCGGCAC GACAGCGGGA
ACGCTCTGTT TTGCGAGCGC CATGCCCCGC ACAACGCCGT TCACCGATGG CGATTATGAC
CTGATCCGAC TGATGGCGCA ATGGATCGGC AGTGAGCAGG ATCGCCTGCA AACTGAAGCA
GCGTTGCGCG AGAGTGAAGA ACGCTTCGCG CTGCTCGCCA GCGTTACGAC CGAAGGAGTG
ATTATCAGTG AGCAGGGGAT GATCGTCGAC GCCAATGCCG CTGCTGGAAC TCTGTTTGGC
GTGCCGCCGG AGCGTTTGCG CGGCATGCCG GTCTTTGAGT TTACGACGCC AGAAGGGCGC
GAGAAAGTCG CGCGCGCGCT CACAACCGGC TATGATCGTC CTTATGAGGT GCTCGCCCGG
CGTATCGATG GGACCCTCTT TCCCGCTGAG GTCACCGGTC GCAACATTCC CTATCACGGT
CGCACGGCGC GCGTGACGAC GATCCGCGAT ATTTCGCGGC AGCGACTGGC GGAAGCCGCA
CTCCGCGCCA GTGAAGAGCG GTTTCGCCAG TTGGCGGAGA ACGTCAATCA GGTCTTCTGG
ATGTCTACTC CATCGCTCGA CCAGATCCTG TACGTCAATC CGGCCTACGA ACGCATTTGG
GGGCGATCCT GCGATAGCCT GTATGCTCAA CCGTCCTCGC TCTTCGAGGC GATTGTTCCT
GAAGACCGCG AGCGAGCGCT TGCGCTTCAT CGGGCAGAGT ATGCGCGCGG ATACAGTATC
GAGTTTCAAA TCCTGCACAC CGACGGTCAG CAGCGCTGGA TCCTGACCCG CGCATTCCCG
GTGATCAACG AGGCGGGCGC CGTGTATCGC ATCGCCGCGA TTTCTGAAGA TGTCACCGAG
CGCAAACAGG CAGAGGCGGA ATTGCGCGCC GCAATGACGG CGCTGGAAGT GCAGTATCAG
ACCGCAGATC GCGCCCAGAG CGAACTTCGC GCCATCCTCG ACGCTTCCAG CGAGGTGATC
GCCCTTCTCG CGCCAGATGG CGCGTTCCTG ACCGTCAACC GTCGTTTCTG TGATATATTT
GGCGTGCCTG CCGATCAGGT GCTGGGACGA CGCCTGATTG ATATGCGCGC CGAGATCCGG
TGGTTCTTCG GTGATGCCGA TGAGGTGTAT GAGCGGATGC TCAGCGCGTT ACAGGATGCT
CAAGACGTCT TCCGTGAGCA GGTAGTGCAA CTCAGACCGC AGCATCGTGA ACTCGCCATC
TTCTCCGCGC CGGTCTGGAC TGCCAATCAG GTCCACCTTG GGCGACTCTA CGTCTTCCGC
GATGTCACCC ATGAACGCGC CGTTGAACGC ATGAAGTCCG AGTTTGTGGC GATGGTGTCG
CATGAACTGC GCACGCCGCT GACTTCTATC AAAGGGTATA TCGATATGCT GCTCGATGGC
GATGCCGGAC CGCTTGCCGT CGAGCATCAG GAACTTTTAC AGATCGTCAA ATCGAATGCC
GACCGGTTGC TGCTCCTGAT CAACGATCTG CTCGATATGT CGCGCATTGA GGCGGGGAAA
CTGATGCTCC ACCGCGCGCC GCTCGATGTT CGCCCGTTGA TCCGTCAGGT TGCCACAGCC
CTGCGCCCGC AACTGGACGC AAAACACCAG CGTCTGAATC TGGACCTTTC TGAAACCCCT
CCCGATGACG CGCCGCCGCT GATGTTCGGT GATGCGGCGC GTGTCCATCA GATTTTAACC
AACGTGCTCT CGAATGCGAT TAAGTATACA CCTCAGGGTG GCGAGATTTC AGTTCGTCTC
TCCGTGGAAC CGCCGTGGAT GTGCATCGCC GTGCAGGATA CCGGCATCGG CTTGACCCCT
GAGGAACAGG AGCGCATCTT CGATCGTTTC TACCGCGTGC GCAACCGTGC AACGCGCGAA
GCCAGCGGAA CCGGGCTTGG TCTGGCTATT ACCCGGTCGC TGGTTGATCT GCACCAGGGG
CGCATTACCG TTGAGAGCGA AGCAGGCAGA GGTTCGACGT TCCGGATCTG CTTTCCGCTG
CTGACCTCGC TCGATGGCAT CAATGACGAT GAGGCATTGG CGCAAGTTTC GACGGGGGAA
CTGACGTGA
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| Protein sequence | MPRTIETMNT THAASSSAQV IRRIIAGFAL ALGSITVIAL ISYGWTQYIL ANERDRFNLL
AANSLQLIRL QQIALAAEQV MDTSDPEIAA QARETLSAAI DEMAQSQQEL SRMVATLPPD
DPLWRLYADP ATAFDARVQE FLARARRLRD TAPDPQHPDL QVIRRMALYD LPPLFRNASR
LYVDARRSLL QTLDIMHATF LGVTLLALAF EGIFIFRPMV REARGYITQR DVSESRLRAR
ERVTRALYDI TSTSQLDHLQ KVQALLEMGC DYFHMPVGVL TRIDGEELEI VAVRDPGHRM
KPGERFPLAD RYCAAVLDAG APVIIDHASQ SGWNDHRCYR LTRMEAYIGA PVQVRGTTAG
TLCFASAMPR TTPFTDGDYD LIRLMAQWIG SEQDRLQTEA ALRESEERFA LLASVTTEGV
IISEQGMIVD ANAAAGTLFG VPPERLRGMP VFEFTTPEGR EKVARALTTG YDRPYEVLAR
RIDGTLFPAE VTGRNIPYHG RTARVTTIRD ISRQRLAEAA LRASEERFRQ LAENVNQVFW
MSTPSLDQIL YVNPAYERIW GRSCDSLYAQ PSSLFEAIVP EDRERALALH RAEYARGYSI
EFQILHTDGQ QRWILTRAFP VINEAGAVYR IAAISEDVTE RKQAEAELRA AMTALEVQYQ
TADRAQSELR AILDASSEVI ALLAPDGAFL TVNRRFCDIF GVPADQVLGR RLIDMRAEIR
WFFGDADEVY ERMLSALQDA QDVFREQVVQ LRPQHRELAI FSAPVWTANQ VHLGRLYVFR
DVTHERAVER MKSEFVAMVS HELRTPLTSI KGYIDMLLDG DAGPLAVEHQ ELLQIVKSNA
DRLLLLINDL LDMSRIEAGK LMLHRAPLDV RPLIRQVATA LRPQLDAKHQ RLNLDLSETP
PDDAPPLMFG DAARVHQILT NVLSNAIKYT PQGGEISVRL SVEPPWMCIA VQDTGIGLTP
EEQERIFDRF YRVRNRATRE ASGTGLGLAI TRSLVDLHQG RITVESEAGR GSTFRICFPL
LTSLDGINDD EALAQVSTGE LT
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