| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3403 |
|---|
| Symbol | |
|---|
| ID | 4842257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 3983968 |
|---|
| End bp | 3986202 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640120668 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001051749 |
|---|
| Protein GI | 126175600 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGTC AAGAACAAGA TATCTTTTTT TTAGACGAAC AACCGTCACC ACAACACCTC
GAAAATCAAA AAACAGTCAA AATACTCACG GTGGACGATG ACTCAAACTT CCAACGTTCG
ACCGCCTTCG CGTTATCTAC CCTCAAAGTA TTAGATTGTA AAATTGAGCT GGCCCAAGCC
TTTAGCTATG CAGAAGCCTG CCAAGTGTTA ACGAAGGAAA ATGATTTTGC GATCGCCTTA
ATCGATGTGG TGATGGAAAC CGAAGATGCA GGGCTACGGT TAGTCCGTGC CATTCGGGAA
GTGCTCGGTA ACGAAAAAAT CCGCATTATT TTGCTTACAG GTCAGCCTGG TATGGCCCCT
ATTTTCGATG TAATGCGAAA TTACGATATC AACGACTATT GGACTAAATC CGAGTTATCG
GCCGATAGAC TGCAAACTAT CCTCACGACT AACCTACGCT CATATCAACA AATTAGCAGT
ATTGCCAATG CTAAGCGGGG TTTGCAACTG ATTGCCGAGT CCAGCGGCGC GCTCTACACC
TCTCGCAATA TCAAAGAACT CTCAGGCAAG ATGCTGCGAC AATTATCCCA GCTATTAAAC
CTGCCCCATG GCGGCATTGT GTGCGTGAAA TCAACGGGGG AATTAACTGA ACAGGGTATT
TCCCACCAAA TTATTGCCGC ATCGGGCGAG TTTGAACCTT ATTTTGGCTA TGCTTTACAG
CAGCTTGAGC AGCAACATAT CCGAGCACAA CTTGAACTTT GCCTGAGCCG CAGGCAGTCT
CGTATCGAAA ATGACTTTAC TTGCCTCTTC TTCCCCGACG AACTCGCAGG CGCCGATTAC
TCCGTTTATT TAGCCACAGG CAGACCACTA GATATCACGG AAACTGAACT GATCCGTGTG
TTTAGTATGA ATATTTGTGG CGGCTTGCAT AGCGTGTCGC TAATGAGCCA ACTAGATAAG
ATTGCTTTTG AAGATCCGCT CGTCAAAATC CCTAATCTCA ACGTGCTGAT CCGCACCTTA
GAAGGCGTGC TGGCGGAAGA CATTCGTGAA AAATTTAATT TATTGATCAT TGATATTGAT
AAGTTTTCCG ACTTTAATCG TGTATTTGGT TCGCCCCAAG GCAACGAGAT GCTCAAACAC
GTTGCCTCTT GTTTGCGTGA ACACTTTGAT GCTTGTGTGT TAGTCGCTCG CCTCAAGGAT
GATAAATTTG CCGTGCTCGG CCCTAAGACC TTAGTCACCG CCGACATTAT TAGCCGACTG
TTTATTCAAC CCTATCAACA GGGAAAATCG AAGATCACGG TCAATATCAG CACAGTCACA
CTACCGCTAG AATTAGCCGA TGGCACTGCG GTTGATGCCA TAACACAAGT CAACATGGCC
CTGAAAACTG CCAAAAAGTT AGGTATTAGA CAACATGTGA CTTACCAACA AGCCAATGAC
GATAATGTGG CCTATCACTT CGAACTCTTA CAAGCGCTGC AACACAGTAT TACCTGTAAT
GACATCCATA TTGCACTGCA GCCGCAAGTC TGTATTAAAA CGGGTGAAGT CGTCGGGGTT
GAAGCGCTGG CTCGCTGGAC CTTGCCAAAT GGTCAAAATG TGCCGCCGTT GGATTTTATC
CCAATTGCCG AAGCGACAGG TTTGATCACC CAACTCGGTG AGCAACTATT CGTGCAATCT
TGCCAAGCAC TCTGCGCACT CAATGAGGCG GGTTATACCA ATTTGTGTAT GGGAGTGAAC
TTATCGGCCA TGCAGTTCGA ACAGGAGAAC ATCGTCGATA TTTTAAAACA GCACATTGCC
GACGCTAACA TGCCTCCAGG TCAGATAGAA GTCGAAGTCA CCGAATCGAT TGCGATGCAA
AATTTCGAAA CCATCCGCAA GCAGTTAAAT GACTTACGCT CGATAGATAT TAGAGTCGCG
ATTGACGATT TTGGTACTGG ATTTTCCTCA TTAGCCTATC TCAGCAAACT GACCTTCGAC
CGCATTAAGA TTGATAAATC CTTTATCGAC AATGTCACCT CAGATGATGG CGCCGCTGCG
ATAGTCGATA GCATTATCTT GTTAGGACAA CGCTTCCACA TGAATGTGAT TGCCGAAGGC
GTCGAGACTA AAGAGCAAGC GAAATGGCTA AGCGACCGCG GCTGCCACGA TGCCCAAGGC
TACTTTTATG CTAAGCCAAT GCCACTACCG GAGTTATTAA CTTGGCTTAA AAACTACCAA
AAAACACCAC TATGA
|
|---|
| Protein sequence | MISQEQDIFF LDEQPSPQHL ENQKTVKILT VDDDSNFQRS TAFALSTLKV LDCKIELAQA
FSYAEACQVL TKENDFAIAL IDVVMETEDA GLRLVRAIRE VLGNEKIRII LLTGQPGMAP
IFDVMRNYDI NDYWTKSELS ADRLQTILTT NLRSYQQISS IANAKRGLQL IAESSGALYT
SRNIKELSGK MLRQLSQLLN LPHGGIVCVK STGELTEQGI SHQIIAASGE FEPYFGYALQ
QLEQQHIRAQ LELCLSRRQS RIENDFTCLF FPDELAGADY SVYLATGRPL DITETELIRV
FSMNICGGLH SVSLMSQLDK IAFEDPLVKI PNLNVLIRTL EGVLAEDIRE KFNLLIIDID
KFSDFNRVFG SPQGNEMLKH VASCLREHFD ACVLVARLKD DKFAVLGPKT LVTADIISRL
FIQPYQQGKS KITVNISTVT LPLELADGTA VDAITQVNMA LKTAKKLGIR QHVTYQQAND
DNVAYHFELL QALQHSITCN DIHIALQPQV CIKTGEVVGV EALARWTLPN GQNVPPLDFI
PIAEATGLIT QLGEQLFVQS CQALCALNEA GYTNLCMGVN LSAMQFEQEN IVDILKQHIA
DANMPPGQIE VEVTESIAMQ NFETIRKQLN DLRSIDIRVA IDDFGTGFSS LAYLSKLTFD
RIKIDKSFID NVTSDDGAAA IVDSIILLGQ RFHMNVIAEG VETKEQAKWL SDRGCHDAQG
YFYAKPMPLP ELLTWLKNYQ KTPL
|
|---|
| |