More than 300 homologs were found in PanDaTox collection
for query gene Rpal_5276 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  61.49 
 
 
584 aa  654    Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  81.62 
 
 
581 aa  957    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  60.89 
 
 
584 aa  672    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  58.43 
 
 
613 aa  661    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3058  phage head-tail adaptor, putative  82.59 
 
 
580 aa  934    Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
579 aa  1175    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  88.26 
 
 
578 aa  1023    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  60.34 
 
 
593 aa  672    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  84.02 
 
 
582 aa  991    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  89.09 
 
 
550 aa  969    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  84.28 
 
 
580 aa  983    Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_010172  Mext_2117  histidine kinase  60.17 
 
 
631 aa  671    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  60.21 
 
 
584 aa  657    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  42.11 
 
 
522 aa  254  3e-66  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  44.18 
 
 
337 aa  248  2e-64  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  41.72 
 
 
517 aa  247  4.9999999999999997e-64  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  35.49 
 
 
526 aa  239  9e-62  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_011138  MADE_02571  response regulator  41.77 
 
 
521 aa  238  2e-61  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  37.61 
 
 
524 aa  236  1.0000000000000001e-60  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.3 
 
 
746 aa  235  2.0000000000000002e-60  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  40.94 
 
 
741 aa  235  2.0000000000000002e-60  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  42.41 
 
 
518 aa  234  4.0000000000000004e-60  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  37.57 
 
 
523 aa  231  3e-59  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  34.89 
 
 
521 aa  230  4e-59  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  36.72 
 
 
523 aa  228  2e-58  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  36.72 
 
 
523 aa  228  2e-58  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_004347  SO_2366  response regulator  36.72 
 
 
525 aa  227  4e-58  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  40.71 
 
 
531 aa  227  4e-58  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  36.72 
 
 
523 aa  226  6e-58  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  36.72 
 
 
523 aa  226  6e-58  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  36.72 
 
 
523 aa  226  6e-58  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  39.03 
 
 
525 aa  224  3e-57  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  39.03 
 
 
525 aa  224  3e-57  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  36.72 
 
 
525 aa  223  9.999999999999999e-57  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  39.76 
 
 
531 aa  220  6e-56  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  35.68 
 
 
536 aa  220  6e-56  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  39.1 
 
 
529 aa  220  7e-56  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  37.62 
 
 
767 aa  218  2.9999999999999998e-55  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.36 
 
 
766 aa  214  2.9999999999999995e-54  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  34.33 
 
 
523 aa  213  9e-54  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  37.95 
 
 
513 aa  210  7e-53  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  36.96 
 
 
513 aa  205  2e-51  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  36.96 
 
 
513 aa  205  2e-51  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  36.96 
 
 
513 aa  204  3e-51  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.78 
 
 
763 aa  203  6e-51  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  37.12 
 
 
520 aa  203  7e-51  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.43 
 
 
746 aa  201  3.9999999999999996e-50  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  35.67 
 
 
527 aa  199  1.0000000000000001e-49  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  34.74 
 
 
515 aa  199  1.0000000000000001e-49  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  36.76 
 
 
740 aa  197  3e-49  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_011138  MADE_01215  Response regulator  36.74 
 
 
509 aa  193  9e-48  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  37.22 
 
 
522 aa  191  4e-47  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.05 
 
 
758 aa  181  4e-44  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  38.08 
 
 
437 aa  181  4.999999999999999e-44  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  30.23 
 
 
525 aa  178  2e-43  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  34.29 
 
 
508 aa  177  6e-43  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  34.85 
 
 
512 aa  173  6.999999999999999e-42  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  34.16 
 
 
743 aa  173  6.999999999999999e-42  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2551  ATP-binding region ATPase domain protein  41.15 
 
 
398 aa  173  1e-41  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.86 
 
 
744 aa  172  2e-41  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.54 
 
 
744 aa  171  3e-41  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.54 
 
 
744 aa  171  4e-41  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.54 
 
 
744 aa  171  4e-41  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1190  histidine kinase  38.72 
 
 
646 aa  166  1.0000000000000001e-39  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  56.94 
 
 
440 aa  163  7e-39  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  41.37 
 
 
519 aa  160  4e-38  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_010571  Oter_1483  integral membrane sensor signal transduction histidine kinase  38.56 
 
 
477 aa  159  2e-37  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  47.62 
 
 
398 aa  157  7e-37  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_007901  Rfer_4413  response regulator receiver sensor signal transduction histidine kinase  25.7 
 
 
565 aa  155  2e-36  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  45.14 
 
 
432 aa  154  5e-36  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1802  GAF sensor signal transduction histidine kinase  35.42 
 
 
456 aa  151  3e-35  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  30.57 
 
 
733 aa  150  6e-35  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1898  integral membrane sensor signal transduction histidine kinase  35.19 
 
 
546 aa  150  8e-35  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  36.8 
 
 
378 aa  145  2e-33  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_010681  Bphyt_1282  PAS/PAC sensor signal transduction histidine kinase  35.71 
 
 
548 aa  144  3e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  0.153514  normal  0.0403413 
 
 
-
 
NC_011831  Cagg_0838  GAF sensor signal transduction histidine kinase  36.52 
 
 
461 aa  141  3e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2689  multi-sensor signal transduction histidine kinase  31.97 
 
 
646 aa  141  3.9999999999999997e-32  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.119288 
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  29.41 
 
 
471 aa  140  4.999999999999999e-32  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1284  histidine kinase  29.96 
 
 
560 aa  140  7e-32  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0983353  n/a   
 
 
-
 
NC_008576  Mmc1_0401  response regulator receiver sensor signal transduction histidine kinase  41.01 
 
 
415 aa  139  1e-31  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.653943 
 
 
-
 
NC_010086  Bmul_4245  multi-sensor hybrid histidine kinase  35.22 
 
 
654 aa  139  2e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3854  response regulator receiver Signal transduction histidine kinase  33.33 
 
 
386 aa  138  3.0000000000000003e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1191  periplasmic sensor hybrid histidine kinase  33.9 
 
 
697 aa  138  3.0000000000000003e-31  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.604254  n/a   
 
 
-
 
NC_008061  Bcen_3990  multi-sensor hybrid histidine kinase  36.96 
 
 
666 aa  138  3.0000000000000003e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4377  multi-sensor hybrid histidine kinase  36.96 
 
 
666 aa  138  3.0000000000000003e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4318  ATPase domain-containing protein  37.66 
 
 
593 aa  138  3.0000000000000003e-31  Nocardioides sp. JS614  Bacteria  normal  0.819924  n/a   
 
 
-
 
NC_010515  Bcenmc03_5978  PAS/PAC sensor hybrid histidine kinase  36.09 
 
 
656 aa  137  5e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.410257  normal 
 
 
-
 
NC_010087  Bmul_5450  multi-sensor hybrid histidine kinase  34.63 
 
 
799 aa  137  6.0000000000000005e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00754974 
 
 
-
 
NC_010577  XfasM23_1922  PAS/PAC sensor signal transduction histidine kinase  34.67 
 
 
558 aa  135  1.9999999999999998e-30  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1601  CheB methylesterase, CheR methyltransferase, hybrid histidine kinase  33.46 
 
 
1222 aa  135  1.9999999999999998e-30  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.472526  n/a   
 
 
-
 
NC_007604  Synpcc7942_1816  periplasmic sensor hybrid histidine kinase  32.13 
 
 
977 aa  135  1.9999999999999998e-30  Synechococcus elongatus PCC 7942  Bacteria  normal  0.218789  normal  0.39116 
 
 
-
 
NC_010513  Xfasm12_1997  histidine kinase/response regulator hybrid protein  34.67 
 
 
558 aa  135  3e-30  Xylella fastidiosa M12  Bacteria  normal  0.947527  n/a   
 
 
-
 
NC_009972  Haur_3937  GAF sensor signal transduction histidine kinase  35.8 
 
 
701 aa  134  3.9999999999999996e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4240  multi-sensor hybrid histidine kinase  33.33 
 
 
1064 aa  134  5e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0748  GAF sensor signal transduction histidine kinase  36.28 
 
 
815 aa  134  5e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1522  response regulator receiver sensor signal transduction histidine kinase  30.39 
 
 
389 aa  134  6e-30  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1495  response regulator receiver sensor signal transduction histidine kinase  30.39 
 
 
389 aa  134  6e-30  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_1027  integral membrane sensor signal transduction histidine kinase  30.62 
 
 
473 aa  133  6.999999999999999e-30  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3793  multi-sensor hybrid histidine kinase  35.34 
 
 
664 aa  134  6.999999999999999e-30  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.191798 
 
 
-
 
NC_010552  BamMC406_4258  multi-sensor hybrid histidine kinase  35.71 
 
 
663 aa  133  9e-30  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.267585 
 
 
-
 
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