| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4035 |
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| Symbol | |
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| ID | 4175824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4857998 |
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| End bp | 4860238 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638057071 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_663588 |
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| Protein GI | 109900333 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.398097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTCCAA TGGAATATGA GAATGATGAG CTAATTTTTC TCTCTGAGGA GAACACGGCT
GACAACACTG AATTCGCAGG AAGCTGGAAT ATACTGGTGG TTGATGACGA TGAGGAAATC
CACTCGGTAA CACGTTTGGC CCTTTCTGAT TTAGTGCTTA ATGACCGAAA CTTGACCTTT
TATCACGCCT ATTCCAAGGC TGAAGCCCTT GAAATTATAC AGTCTCTAGG CTCTACTTTA
GCGATTATTT TGCTAGATGT CGTTATGGAA ACGGACGACG CAGGCCTGCA AGTGGCCCAA
ACTATGCGAA ATGAACTGAA GTTGACAGAG CCCAGAATCA TTTTGCGTAC AGGGCAACCG
GGTTATGCTC CTGAAGAAAG TGTAATCAAA GAATACGACA TCAATGACTA CAAGACGAAA
ACAGAGTTAA CGCGTAGCAA ACTTGTCACA ACCATTATCG CCTCGTTACG CTCATATCAA
CAGATTCTAA CGATCAATCA AAGTCGTATT GGTTTAGAAA AAATCATCCA TTCGGCCGCA
AATTTACTTG AAGAGCACTC AGTCAATCGA TTTTGTGAAG GTGTGGTGAC CCAAATAAGC
TCGCTTATTG GTTTGGACTC CTCAGGGGTT GTATGTGCCA GAGCTGGTTC CGTTATCGAT
AAAGATGAAA ATGCGGTCTA TGTATTGGGT GCTGCAGGAG AGTTCGCAAG TTATATCAAT
AAAAAAATTG ATAATCTGCA CGATGAAAAG ATAGTGCAAT CGGTTAATCA GTGTCTTCAA
AAACAGCATC ACATATACGG CGATAACTTC ACCGTGCTTT ATTTGAAAAG CTCTGAATAT
GACGCAGCTG TATTCTTAAA AATTGGTCGA CAAATATCGG AAGCTTATGA GCAGCTGATC
GAGGTGTTTT TAGCAAGTAT TTCAGTGGGT TATGAGAATG TTAATTTATT CCATCAACTA
CACACTGCCG CGTTTAAAGA TTGGCTAACC AAGCTGCCAA ATAGAATCGA ATTTATTAAC
CGCCTAGACG ATATCAGTAA TGATGCAGAG CACGCTAATG ATGTGGTTGC TTTGATTGAT
ATTAATCATT TCGCCGATAT CAATGACGGG CTAGGCCAGG ATACTGGTAA CGACACCTTA
TTGGCCTTAG CTCAACGTAT TGAATCCACT TTTCCGACAG CGGCAGCGCT GGGGCGAATC
GGCTCGGACG TATTCGCCGT TGTCGGTACA GAGCGAGAAG TCAATCCTGC TACGCTTCAG
GGTTTGTTTA ATAATGCATT TGAGGCTGGC GACCATATGC TACCGCTGAG CGCGGCATTT
GGTTTTTGTC GGTTTAATGG TAAAAAAAAT ACGGGTATCA ATATACTCAA GCACGCCAAC
ATAGCGTTAA ATAGGGCGAA AAAAAGTCTA AAAACGAATT TTGAGTATTA CGCCCCAGAA
ATGGAAGAGC AAACGACGTG GCGCTTAGAG ATGATCCGTC AGTTGCGTAC AGACTTCGCT
GAGCGAAAAT TGCAATTGTG GTATCAGCCG CAAATTGACT TAGTGACTCA AGATATCATT
GGTATGGAAG CGCTACTTCG TTGGCCTTCT TCTGATGGGG GATTCGTCTC TCCCGCGGTA
TTTGTACCAC TGGCAGAATA CTCAGGCTTA ATCATAGATA TTGGTGCGTG GGTTATGCAA
GAGTCATGTG AAAAGCTGCG TTTGCTAACA GAAGCAGGAT TCAAAGGCTT GCGCATGGCA
GTCAATATAT CTATGCCTCA ATTTCGTGAT CCTGCGTTTA TAAACTTGGT TAAAAAAGCA
ATTATAAACA ATGATTTAGA GCCTGATTGC ATAGAGTTAG AAATCACTGA AAGCATTGTG
ATGGATGAAC CCCAATTGGT GGTTGAAGCA CTGAATGAAC TCAAAGAGTT TGGCGTTAAG
GTAGCCCTTG ATGATTTTGG TACAGGCTTT TCGTCAATGA GTTATTTACA ACAGCTACCG
CTTGATCGCT TGAAAGTTGA TAGAGCGTTT GTTAGTGAAA TAAGCCCCAA TAAATCGGCC
TTTATTGCTG AAACCATCGT CACACTTGGG ACAAAACTCG GTCTGAGGAC GATTGCTGAA
GGTATTGAAA AGCCAGAGCA AGCCAACTAT TTACTCAAGC TTGGTTGTGA TGAAGCCCAA
GGCTTTATGT ATGCTAAACC AATGCCTTTT GGTGAATTGC TGACATTTAT AGGGCAACGC
AAAAGAGGAC AATCCCTGTA G
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| Protein sequence | MCPMEYENDE LIFLSEENTA DNTEFAGSWN ILVVDDDEEI HSVTRLALSD LVLNDRNLTF
YHAYSKAEAL EIIQSLGSTL AIILLDVVME TDDAGLQVAQ TMRNELKLTE PRIILRTGQP
GYAPEESVIK EYDINDYKTK TELTRSKLVT TIIASLRSYQ QILTINQSRI GLEKIIHSAA
NLLEEHSVNR FCEGVVTQIS SLIGLDSSGV VCARAGSVID KDENAVYVLG AAGEFASYIN
KKIDNLHDEK IVQSVNQCLQ KQHHIYGDNF TVLYLKSSEY DAAVFLKIGR QISEAYEQLI
EVFLASISVG YENVNLFHQL HTAAFKDWLT KLPNRIEFIN RLDDISNDAE HANDVVALID
INHFADINDG LGQDTGNDTL LALAQRIEST FPTAAALGRI GSDVFAVVGT EREVNPATLQ
GLFNNAFEAG DHMLPLSAAF GFCRFNGKKN TGINILKHAN IALNRAKKSL KTNFEYYAPE
MEEQTTWRLE MIRQLRTDFA ERKLQLWYQP QIDLVTQDII GMEALLRWPS SDGGFVSPAV
FVPLAEYSGL IIDIGAWVMQ ESCEKLRLLT EAGFKGLRMA VNISMPQFRD PAFINLVKKA
IINNDLEPDC IELEITESIV MDEPQLVVEA LNELKEFGVK VALDDFGTGF SSMSYLQQLP
LDRLKVDRAF VSEISPNKSA FIAETIVTLG TKLGLRTIAE GIEKPEQANY LLKLGCDEAQ
GFMYAKPMPF GELLTFIGQR KRGQSL
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