More than 300 homologs were found in PanDaTox collection
for query gene RPD_4375 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  59.55 
 
 
613 aa  657    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3058  phage head-tail adaptor, putative  82.85 
 
 
580 aa  890    Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  89.09 
 
 
579 aa  988    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_010172  Mext_2117  histidine kinase  61.61 
 
 
631 aa  669    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  92.9 
 
 
578 aa  1015    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  85.53 
 
 
582 aa  953    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  62.87 
 
 
584 aa  669    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
550 aa  1113    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  85.22 
 
 
580 aa  942    Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  83.21 
 
 
581 aa  919    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  61.79 
 
 
593 aa  670    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  61.34 
 
 
584 aa  650    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  63.24 
 
 
584 aa  655    Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_011138  MADE_02571  response regulator  44.37 
 
 
521 aa  241  4e-62  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  44.74 
 
 
337 aa  237  4e-61  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  41.69 
 
 
522 aa  235  2.0000000000000002e-60  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  40.51 
 
 
517 aa  232  2e-59  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  38.69 
 
 
523 aa  230  5e-59  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  38.3 
 
 
523 aa  228  2e-58  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  38.3 
 
 
523 aa  228  2e-58  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  38.3 
 
 
523 aa  227  4e-58  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_004347  SO_2366  response regulator  37.13 
 
 
525 aa  227  5.0000000000000005e-58  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  43.93 
 
 
531 aa  226  7e-58  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  43.1 
 
 
518 aa  224  3e-57  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  39.41 
 
 
523 aa  224  4e-57  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  39.41 
 
 
523 aa  224  4e-57  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  36.97 
 
 
524 aa  223  9e-57  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.31 
 
 
746 aa  222  1.9999999999999999e-56  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  37.72 
 
 
525 aa  221  1.9999999999999999e-56  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  37.72 
 
 
525 aa  221  1.9999999999999999e-56  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  42.76 
 
 
741 aa  220  6e-56  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  34.13 
 
 
526 aa  218  2e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  37.27 
 
 
525 aa  217  5e-55  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  39.46 
 
 
531 aa  215  1.9999999999999998e-54  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  35.93 
 
 
521 aa  214  2.9999999999999995e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  37.92 
 
 
767 aa  213  4.9999999999999996e-54  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  37.18 
 
 
536 aa  213  1e-53  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  38.13 
 
 
529 aa  212  2e-53  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  39.73 
 
 
740 aa  203  6e-51  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  34.76 
 
 
523 aa  201  3e-50  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  38.44 
 
 
527 aa  201  3.9999999999999996e-50  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  34.7 
 
 
515 aa  201  3.9999999999999996e-50  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  35.02 
 
 
520 aa  199  9e-50  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  34.7 
 
 
513 aa  196  8.000000000000001e-49  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  34.7 
 
 
513 aa  196  8.000000000000001e-49  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  34.7 
 
 
513 aa  196  1e-48  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  34.7 
 
 
513 aa  196  1e-48  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.13 
 
 
766 aa  195  2e-48  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.52 
 
 
746 aa  192  1e-47  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  37.33 
 
 
522 aa  190  7e-47  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.89 
 
 
763 aa  190  7e-47  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  38.73 
 
 
437 aa  187  5e-46  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  35.76 
 
 
758 aa  179  8e-44  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_011138  MADE_01215  Response regulator  34.29 
 
 
509 aa  177  6e-43  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  37.85 
 
 
508 aa  172  2e-41  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_013061  Phep_2551  ATP-binding region ATPase domain protein  40.27 
 
 
398 aa  167  2.9999999999999998e-40  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1190  histidine kinase  38.91 
 
 
646 aa  165  2.0000000000000002e-39  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  33.55 
 
 
743 aa  164  3e-39  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  27.95 
 
 
525 aa  164  3e-39  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  34.54 
 
 
512 aa  164  4.0000000000000004e-39  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.38 
 
 
744 aa  163  9e-39  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.03 
 
 
744 aa  162  1e-38  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1483  integral membrane sensor signal transduction histidine kinase  38.24 
 
 
477 aa  162  1e-38  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.03 
 
 
744 aa  161  2e-38  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  34.03 
 
 
744 aa  161  3e-38  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007901  Rfer_4413  response regulator receiver sensor signal transduction histidine kinase  24.32 
 
 
565 aa  153  8.999999999999999e-36  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  32.41 
 
 
733 aa  152  1e-35  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  55 
 
 
440 aa  150  4e-35  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  44.68 
 
 
519 aa  149  1.0000000000000001e-34  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_008340  Mlg_1802  GAF sensor signal transduction histidine kinase  37.86 
 
 
456 aa  148  3e-34  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1898  integral membrane sensor signal transduction histidine kinase  33.55 
 
 
546 aa  148  3e-34  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  52.55 
 
 
398 aa  147  6e-34  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  36.4 
 
 
378 aa  146  1e-33  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_007796  Mhun_2689  multi-sensor signal transduction histidine kinase  31.72 
 
 
646 aa  146  1e-33  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.119288 
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  42.86 
 
 
432 aa  142  1.9999999999999998e-32  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1027  integral membrane sensor signal transduction histidine kinase  30.86 
 
 
473 aa  142  1.9999999999999998e-32  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0134  histidine kinase  36.1 
 
 
547 aa  141  3e-32  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1295  multi-sensor hybrid histidine kinase  26.76 
 
 
1223 aa  139  1e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0981526  n/a   
 
 
-
 
NC_010717  PXO_03078  sensor histidine kinase  33.92 
 
 
678 aa  139  1e-31  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4318  ATPase domain-containing protein  36.96 
 
 
593 aa  139  1e-31  Nocardioides sp. JS614  Bacteria  normal  0.819924  n/a   
 
 
-
 
NC_011830  Dhaf_1284  histidine kinase  29.24 
 
 
560 aa  139  2e-31  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0983353  n/a   
 
 
-
 
NC_007484  Noc_1601  CheB methylesterase, CheR methyltransferase, hybrid histidine kinase  32.94 
 
 
1222 aa  138  3.0000000000000003e-31  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.472526  n/a   
 
 
-
 
NC_011831  Cagg_0838  GAF sensor signal transduction histidine kinase  35.93 
 
 
461 aa  137  4e-31  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1191  periplasmic sensor hybrid histidine kinase  33.06 
 
 
697 aa  137  5e-31  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.604254  n/a   
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  28.87 
 
 
471 aa  137  5e-31  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0401  response regulator receiver sensor signal transduction histidine kinase  45.33 
 
 
415 aa  137  6.0000000000000005e-31  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.653943 
 
 
-
 
NC_010086  Bmul_4245  multi-sensor hybrid histidine kinase  36.09 
 
 
654 aa  137  7.000000000000001e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1716  PAS/PAC sensor hybrid histidine kinase  32.92 
 
 
628 aa  135  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  0.805197  normal 
 
 
-
 
NC_007760  Adeh_2210  periplasmic sensor hybrid histidine kinase  34.72 
 
 
633 aa  136  9.999999999999999e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00664902  n/a   
 
 
-
 
NC_010676  Bphyt_5296  PAS/PAC sensor hybrid histidine kinase  32.81 
 
 
776 aa  136  9.999999999999999e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1282  PAS/PAC sensor signal transduction histidine kinase  35.27 
 
 
548 aa  135  9.999999999999999e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.153514  normal  0.0403413 
 
 
-
 
NC_009767  Rcas_3600  histidine kinase  30.97 
 
 
548 aa  136  9.999999999999999e-31  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.94225  normal 
 
 
-
 
NC_011071  Smal_0447  PAS/PAC sensor hybrid histidine kinase  33.48 
 
 
662 aa  135  1.9999999999999998e-30  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0286  histidine kinase  29.68 
 
 
582 aa  134  3e-30  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000344798  n/a   
 
 
-
 
NC_007413  Ava_4701  multi-sensor hybrid histidine kinase  30.84 
 
 
1274 aa  135  3e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0613664  normal  0.609464 
 
 
-
 
NC_006349  BMAA1979  sensory box histidine kinase/response regulator  35.78 
 
 
771 aa  134  3.9999999999999996e-30  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5450  multi-sensor hybrid histidine kinase  35.04 
 
 
799 aa  134  3.9999999999999996e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00754974 
 
 
-
 
NC_009079  BMA10247_A2264  sensory box histidine kinase/response regulator  35.78 
 
 
771 aa  134  3.9999999999999996e-30  Burkholderia mallei NCTC 10247  Bacteria  normal  0.87596  n/a   
 
 
-
 
NC_008784  BMASAVP1_1000  sensory box histidine kinase/response regulator  35.78 
 
 
771 aa  134  3.9999999999999996e-30  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1289  sensory box histidine kinase/response regulator  35.78 
 
 
772 aa  134  3.9999999999999996e-30  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
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