More than 300 homologs were found in PanDaTox collection
for query gene RPC_0095 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_0711  response regulator receiver sensor signal transduction histidine kinase  82.79 
 
 
581 aa  979    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5276  response regulator receiver sensor signal transduction histidine kinase  84.02 
 
 
579 aa  991    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.606728  n/a   
 
 
-
 
NC_011757  Mchl_2394  response regulator receiver sensor signal transduction histidine kinase  61.36 
 
 
593 aa  685    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3058  phage head-tail adaptor, putative  82.73 
 
 
580 aa  952    Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00943131  normal  0.0427518 
 
 
-
 
NC_011894  Mnod_1253  response regulator receiver sensor signal transduction histidine kinase  61.7 
 
 
584 aa  685    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3287  response regulator receiver sensor signal transduction histidine kinase  61.81 
 
 
584 aa  678    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.847642  normal 
 
 
-
 
NC_007778  RPB_4666  response regulator receiver sensor signal transduction histidine kinase  85.37 
 
 
578 aa  991    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0095  response regulator receiver sensor signal transduction histidine kinase  100 
 
 
582 aa  1181    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4375  response regulator receiver sensor signal transduction histidine kinase  85.53 
 
 
550 aa  934    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3684  response regulator receiver sensor signal transduction histidine kinase  83.04 
 
 
580 aa  990    Nitrobacter hamburgensis X14  Bacteria  normal  0.896547  n/a   
 
 
-
 
NC_010172  Mext_2117  histidine kinase  61.36 
 
 
631 aa  686    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0208634 
 
 
-
 
NC_010725  Mpop_2070  response regulator receiver sensor signal transduction histidine kinase  58.55 
 
 
613 aa  670    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1996  response regulator receiver sensor signal transduction histidine kinase  62.89 
 
 
584 aa  678    Methylobacterium sp. 4-46  Bacteria  normal  0.0327436  normal  0.170409 
 
 
-
 
NC_013173  Dbac_0491  response regulator receiver modulated metal dependent phosphohydrolase  41.52 
 
 
522 aa  248  2e-64  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.165576  n/a   
 
 
-
 
NC_011138  MADE_03585  response regulator/GGDEF/EAL domain protein  41.38 
 
 
741 aa  244  3e-63  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0131  response regulator receiver (CheY) and unknown domain-containing protein  44.81 
 
 
337 aa  243  5e-63  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2247  response regulator receiver modulated metal dependent phosphohydrolase  40.61 
 
 
518 aa  238  2e-61  Desulfovibrio vulgaris DP4  Bacteria  normal  0.77168  normal 
 
 
-
 
NC_009831  Ssed_2209  response regulator receiver modulated metal dependent phosphohydrolase  34.16 
 
 
526 aa  234  3e-60  Shewanella sediminis HAW-EB3  Bacteria  normal  0.195398  normal 
 
 
-
 
NC_008228  Patl_2561  response regulator receiver modulated metal dependent phosphohydrolase  39.68 
 
 
517 aa  234  3e-60  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00356747  n/a   
 
 
-
 
NC_008228  Patl_4035  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  40.19 
 
 
746 aa  233  9e-60  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.398097  n/a   
 
 
-
 
NC_007519  Dde_3114  metal dependent phosphohydrolase  36.49 
 
 
523 aa  233  1e-59  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00390297  n/a   
 
 
-
 
NC_011138  MADE_02571  response regulator  41.45 
 
 
521 aa  232  1e-59  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0493  response regulator receiver modulated metal dependent phosphohydrolase  40.23 
 
 
531 aa  231  2e-59  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.366798  n/a   
 
 
-
 
NC_004347  SO_2366  response regulator  37.09 
 
 
525 aa  230  6e-59  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2172  response regulator receiver modulated metal dependent phosphohydrolase  35.63 
 
 
523 aa  226  8e-58  Shewanella baltica OS185  Bacteria  normal  0.0465103  n/a   
 
 
-
 
NC_009997  Sbal195_2222  response regulator receiver modulated metal dependent phosphohydrolase  36.2 
 
 
523 aa  226  8e-58  Shewanella baltica OS195  Bacteria  normal  0.151758  normal  0.307874 
 
 
-
 
NC_011663  Sbal223_2212  response regulator receiver modulated metal dependent phosphohydrolase  36.2 
 
 
523 aa  226  1e-57  Shewanella baltica OS223  Bacteria  normal  0.16257  normal  0.683218 
 
 
-
 
NC_008700  Sama_1789  response regulator receiver protein  35.2 
 
 
524 aa  222  1.9999999999999999e-56  Shewanella amazonensis SB2B  Bacteria  normal  0.0101023  normal  0.210198 
 
 
-
 
NC_009035  Sbal_4485  hypothetical protein  36.31 
 
 
523 aa  221  3e-56  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2199  response regulator receiver modulated metal dependent phosphohydrolase  36.31 
 
 
523 aa  221  3e-56  Shewanella baltica OS155  Bacteria  normal  0.179718  n/a   
 
 
-
 
NC_010506  Swoo_2427  response regulator receiver modulated metal dependent phosphohydrolase  33.42 
 
 
521 aa  221  3.9999999999999997e-56  Shewanella woodyi ATCC 51908  Bacteria  normal  0.219655  hitchhiker  0.000118537 
 
 
-
 
NC_008321  Shewmr4_2004  response regulator receiver modulated metal dependent phosphohydrolase  37.05 
 
 
525 aa  220  5e-56  Shewanella sp. MR-4  Bacteria  normal  0.0562345  hitchhiker  0.000000282251 
 
 
-
 
NC_008322  Shewmr7_1971  response regulator receiver modulated metal dependent phosphohydrolase  37.05 
 
 
525 aa  220  5e-56  Shewanella sp. MR-7  Bacteria  normal  0.0825869  normal  0.0109864 
 
 
-
 
NC_008700  Sama_0496  putative diguanylate phosphodiesterase  37.34 
 
 
767 aa  220  5e-56  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.788805 
 
 
-
 
NC_013173  Dbac_0215  response regulator receiver modulated metal dependent phosphohydrolase  34.82 
 
 
536 aa  219  7.999999999999999e-56  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2105  response regulator receiver modulated metal dependent phosphohydrolase  36.31 
 
 
525 aa  219  1e-55  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00173233  normal  0.407049 
 
 
-
 
NC_009052  Sbal_2012  response regulator receiver modulated metal dependent phosphohydrolase  38.39 
 
 
531 aa  217  5e-55  Shewanella baltica OS155  Bacteria  normal  0.0999069  n/a   
 
 
-
 
NC_009052  Sbal_3786  response regulator receiver modulated metal dependent phosphohydrolase  38.78 
 
 
529 aa  215  1.9999999999999998e-54  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2868  response regulator receiver modulated metal dependent phosphohydrolase  35 
 
 
513 aa  211  3e-53  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0659  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  39.51 
 
 
766 aa  211  4e-53  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2755  response regulator receiver modulated metal dependent phosphohydrolase  34.4 
 
 
520 aa  210  6e-53  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0394  response regulator/GGDEF/EAL domain-containing protein  39.33 
 
 
740 aa  209  8e-53  Colwellia psychrerythraea 34H  Bacteria  normal  0.273558  n/a   
 
 
-
 
NC_009665  Shew185_2885  response regulator receiver modulated metal dependent phosphohydrolase  34.44 
 
 
513 aa  207  3e-52  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1491  response regulator receiver modulated metal dependent phosphohydrolase  34.44 
 
 
513 aa  207  3e-52  Shewanella baltica OS223  Bacteria  normal  0.0411849  normal  0.405552 
 
 
-
 
NC_009997  Sbal195_3014  response regulator receiver modulated metal dependent phosphohydrolase  34.44 
 
 
513 aa  207  3e-52  Shewanella baltica OS195  Bacteria  normal  normal  0.152382 
 
 
-
 
NC_007954  Sden_2546  metal-dependent phosphohydrolase  34.77 
 
 
515 aa  206  1e-51  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1853  metal-dependent phosphohydrolase  36.83 
 
 
527 aa  202  1.9999999999999998e-50  Shewanella denitrificans OS217  Bacteria  normal  0.0219327  n/a   
 
 
-
 
NC_007912  Sde_1361  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.16 
 
 
746 aa  201  3.9999999999999996e-50  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1983  response regulator receiver modulated metal dependent phosphohydrolase  31.32 
 
 
523 aa  199  9e-50  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00722808  normal 
 
 
-
 
NC_011138  MADE_01215  Response regulator  34.67 
 
 
509 aa  192  2e-47  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.204793  n/a   
 
 
-
 
NC_009456  VC0395_1019  putative response regulator  35.76 
 
 
522 aa  190  8e-47  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1988  response regulator receiver modulated metal dependent phosphohydrolase  36.11 
 
 
437 aa  188  3e-46  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3810  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.76 
 
 
763 aa  186  8e-46  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3036  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.05 
 
 
758 aa  183  8.000000000000001e-45  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.830853 
 
 
-
 
NC_013173  Dbac_0492  response regulator receiver modulated metal dependent phosphohydrolase  36.51 
 
 
508 aa  179  9e-44  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0844408  n/a   
 
 
-
 
NC_009831  Ssed_1780  response regulator receiver modulated metal dependent phosphohydrolase  29.74 
 
 
525 aa  178  2e-43  Shewanella sediminis HAW-EB3  Bacteria  normal  0.33037  normal 
 
 
-
 
NC_008577  Shewana3_0868  diguanylate cyclase/phosphodiesterase  33.44 
 
 
743 aa  176  9.999999999999999e-43  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2551  ATP-binding region ATPase domain protein  41.52 
 
 
398 aa  174  5.999999999999999e-42  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0967  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.12 
 
 
744 aa  172  1e-41  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0959  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.81 
 
 
744 aa  172  1e-41  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3403  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.81 
 
 
744 aa  172  1e-41  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0933  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.81 
 
 
744 aa  172  2e-41  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1813  response regulator receiver modulated metal dependent phosphohydrolase  33.77 
 
 
512 aa  168  2e-40  Magnetococcus sp. MC-1  Bacteria  normal  0.0479529  normal  0.434013 
 
 
-
 
NC_007643  Rru_A0553  response regulator receiver Signal transduction histidine kinase  56 
 
 
440 aa  166  1.0000000000000001e-39  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.580246  n/a   
 
 
-
 
NC_013501  Rmar_1190  histidine kinase  35.98 
 
 
646 aa  162  2e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1908  response regulator receiver modulated diguanylate cyclase  44.72 
 
 
519 aa  158  3e-37  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.11693  n/a   
 
 
-
 
NC_010571  Oter_1483  integral membrane sensor signal transduction histidine kinase  36.47 
 
 
477 aa  154  4e-36  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1802  GAF sensor signal transduction histidine kinase  39.83 
 
 
456 aa  154  5.9999999999999996e-36  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1898  integral membrane sensor signal transduction histidine kinase  35.06 
 
 
546 aa  152  1e-35  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0497  response regulator receiver modulated metal dependent phosphohydrolase  44.44 
 
 
432 aa  152  1e-35  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0402  response regulator receiver sensor signal transduction histidine kinase  47.02 
 
 
398 aa  152  2e-35  Desulfovibrio vulgaris DP4  Bacteria  normal  0.93747  normal  0.145713 
 
 
-
 
NC_007901  Rfer_4413  response regulator receiver sensor signal transduction histidine kinase  25.74 
 
 
565 aa  151  3e-35  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_4383  response regulator receiver modulated diguanylate phosphodiesterase  31.63 
 
 
733 aa  148  3e-34  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0838  GAF sensor signal transduction histidine kinase  36.36 
 
 
461 aa  145  2e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2689  multi-sensor signal transduction histidine kinase  32.34 
 
 
646 aa  145  2e-33  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.119288 
 
 
-
 
NC_008751  Dvul_2880  multi-sensor signal transduction histidine kinase  45.78 
 
 
576 aa  143  8e-33  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  35.04 
 
 
378 aa  142  9.999999999999999e-33  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_010086  Bmul_4245  multi-sensor hybrid histidine kinase  36.52 
 
 
654 aa  143  9.999999999999999e-33  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5978  PAS/PAC sensor hybrid histidine kinase  37.77 
 
 
656 aa  141  3e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.410257  normal 
 
 
-
 
NC_007511  Bcep18194_B1640  PAS/PAC sensor hybrid histidine kinase  37.34 
 
 
672 aa  140  6e-32  Burkholderia sp. 383  Bacteria  normal  0.934605  normal  0.169753 
 
 
-
 
NC_008061  Bcen_3990  multi-sensor hybrid histidine kinase  38.2 
 
 
666 aa  140  6e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4377  multi-sensor hybrid histidine kinase  38.2 
 
 
666 aa  140  6e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4318  ATPase domain-containing protein  37.93 
 
 
593 aa  139  1e-31  Nocardioides sp. JS614  Bacteria  normal  0.819924  n/a   
 
 
-
 
NC_007604  Synpcc7942_1816  periplasmic sensor hybrid histidine kinase  33.46 
 
 
977 aa  137  6.0000000000000005e-31  Synechococcus elongatus PCC 7942  Bacteria  normal  0.218789  normal  0.39116 
 
 
-
 
NC_013385  Adeg_1027  integral membrane sensor signal transduction histidine kinase  30.19 
 
 
473 aa  137  7.000000000000001e-31  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3552  Cache sensor hybrid histidine kinase  32.33 
 
 
970 aa  137  7.000000000000001e-31  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4317  ATPase domain-containing protein  36.44 
 
 
600 aa  136  8e-31  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1052  sensory transduction histidine kinase  31.97 
 
 
1046 aa  136  9.999999999999999e-31  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_009972  Haur_3937  GAF sensor signal transduction histidine kinase  34.92 
 
 
701 aa  136  9.999999999999999e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2980  integral membrane sensor signal transduction histidine kinase  30.27 
 
 
487 aa  136  9.999999999999999e-31  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00000876727  n/a   
 
 
-
 
NC_011146  Gbem_2673  heavy metal sensor signal transduction histidine kinase  33.59 
 
 
452 aa  135  1.9999999999999998e-30  Geobacter bemidjiensis Bem  Bacteria  normal  0.319226  n/a   
 
 
-
 
NC_009718  Fnod_1705  response regulator receiver modulated metal dependent phosphohydrolase  27.84 
 
 
471 aa  135  1.9999999999999998e-30  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0401  response regulator receiver sensor signal transduction histidine kinase  42.77 
 
 
415 aa  135  1.9999999999999998e-30  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.653943 
 
 
-
 
NC_007760  Adeh_2210  periplasmic sensor hybrid histidine kinase  36.19 
 
 
633 aa  135  3e-30  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00664902  n/a   
 
 
-
 
NC_007413  Ava_1716  PAS/PAC sensor hybrid histidine kinase  31.84 
 
 
628 aa  134  5e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  0.805197  normal 
 
 
-
 
NC_007614  Nmul_A1491  PAS/PAC sensor hybrid histidine kinase  33.33 
 
 
696 aa  134  5e-30  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.125145  n/a   
 
 
-
 
NC_008391  Bamb_3793  multi-sensor hybrid histidine kinase  36.52 
 
 
664 aa  134  6e-30  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.191798 
 
 
-
 
NC_010676  Bphyt_5296  PAS/PAC sensor hybrid histidine kinase  32.02 
 
 
776 aa  133  6.999999999999999e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_5450  multi-sensor hybrid histidine kinase  34.76 
 
 
799 aa  134  6.999999999999999e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00754974 
 
 
-
 
NC_011661  Dtur_0748  GAF sensor signal transduction histidine kinase  36 
 
 
815 aa  133  7.999999999999999e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
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