| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1378 |
|---|
| Symbol | |
|---|
| ID | 4809373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1681546 |
|---|
| End bp | 1683066 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640106802 |
|---|
| Product | response regulator receiver modulated metal dependent phosphohydrolase |
|---|
| Protein accession | YP_001037803 |
|---|
| Protein GI | 125973893 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2206] HD-GYP domain |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000458361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGAAAAA ACAGGCAGGG GAAGTCCTCG GACATTAAAA TAATTGTTGT TGATGATGAA
AAAGGAATAC TGGATTCGTT GTCGGTAATA ATAAAGCGTT TGGGTTATCA GTATACGGGA
GTGAACAACC CTCTTGAAGC GATTGAAAGG GTCCGGGAAG AAGAATTTGA CCTTATGATA
CTGGATTTTT TGATGCAGCC TATATTGGGA GACAAAGTGG TCGAAGAGAT TAGGAAATTT
AATAAAGACA TATATATTCT GCTCTTAACC GGTTACAAAG ATGCAGCACC TCCGCTTAAG
GCAATAAAAT CTCTTGATAT TCAAGGATAT TGTGAGAAAG CGGACAATTT TGACCAATTG
ATACTTTTAA TAGAGTCTGC AGTCAAATCC ATCTATCAGA AAAGAACAAT CAGAAATTTT
AGGGACGGTT TGAATAAAAT TCTTCTTACC GTGCCGGATA TATACCGGCT TAAATCGATT
GAGGAACTGC TTGAAGAAAT TCTTCGCCAT ATTATGGCCT TTGTTAATTG TAAAGATGCA
TTTATTATTA TTGACAATCT CATAGGGGAC GACAAAAATG AAAGTTTGTT TAAAGGAATG
GGAATTTATG ACGTGAGTCC GGACAAGTTT ATAGACATGC TGGAACCGGC TTTTTTGGAG
GAAATGGGAC GTACCAGGAC TTTAAAACAG ATTGCTTATG TTGAAAAAGG AATTATTCTT
CCTCTTATGA GTGACACTAT CCAGACTTTG GGAGTTATTT ACCTTGAGAC CACTCATATT
CCTGTTGAAA TGGAACTGCT TAAGATATAT ATAACTCAGG CGGCAACGTC GATAAGCAAT
ATATACCTTC ATTCCATAGT CAGTATCAAA AATGATGAGC TTGACAGAAC ATACAATGAG
TTGAAACAAA GGTATCTGGA TGCCATACAG GTTTTGCGTC TTACAGTTGA CGCAAAAGAT
GTATATACAA GGGGACATTC GGACAGGGTA GCGTATTATG CGGTAAAAAT AGGCAAAAGC
TTTAATCTGG ACGAAGAGTC GCTGGAAAAG CTCAAAACGG CAGGTATTTT CCACGACATA
GGGAAAATAG GCATTGCCGA TGACATTTTG TTTAAAACCG ACAAGCTGAC TGAAAGCGAA
TATGAAGAGA TTAAAAAGCA TCCTATAAAA GGAGCACATA TATTATCGGC AGTTTCCATG
TTCAAAGATA TTGTTCCTTT GGTAAAGTAC CATCATGAAA GGATAGACGG ACGAGGCTAC
CCATTCGGAC TTAAGGGTGA TGAGATACCT TTCCTTGCGA GAATCATATC CGTGGCTGAT
GCCTTTGACG CGATGACTTC CGACAGGCAG TACAGGTCGA AGCTGTGTTT GGAAGAGGCG
AAAAATCAAA TGATAACAAA CTCAGGAACC CAGTTTGATG CGGAAGTGGT GAAAAGTTTT
TTGGTGCTTT TGGAAGACTA CGACACCATG CAGAAAGAGA TTGAGTACAC TTTTAAAACA
AAAGAGAGCT GTATTTGGTG A
|
|---|
| Protein sequence | MRKNRQGKSS DIKIIVVDDE KGILDSLSVI IKRLGYQYTG VNNPLEAIER VREEEFDLMI
LDFLMQPILG DKVVEEIRKF NKDIYILLLT GYKDAAPPLK AIKSLDIQGY CEKADNFDQL
ILLIESAVKS IYQKRTIRNF RDGLNKILLT VPDIYRLKSI EELLEEILRH IMAFVNCKDA
FIIIDNLIGD DKNESLFKGM GIYDVSPDKF IDMLEPAFLE EMGRTRTLKQ IAYVEKGIIL
PLMSDTIQTL GVIYLETTHI PVEMELLKIY ITQAATSISN IYLHSIVSIK NDELDRTYNE
LKQRYLDAIQ VLRLTVDAKD VYTRGHSDRV AYYAVKIGKS FNLDEESLEK LKTAGIFHDI
GKIGIADDIL FKTDKLTESE YEEIKKHPIK GAHILSAVSM FKDIVPLVKY HHERIDGRGY
PFGLKGDEIP FLARIISVAD AFDAMTSDRQ YRSKLCLEEA KNQMITNSGT QFDAEVVKSF
LVLLEDYDTM QKEIEYTFKT KESCIW
|
|---|
| |