More than 300 homologs were found in PanDaTox collection
for query gene Sden_1356 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_1356  response regulator receiver  100 
 
 
386 aa  793    Shewanella denitrificans OS217  Bacteria  normal  0.235342  n/a   
 
 
-
 
NC_008345  Sfri_2806  response regulator receiver protein  62.95 
 
 
373 aa  493  9.999999999999999e-139  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1467  response regulator receiver protein  59.79 
 
 
367 aa  468  1.0000000000000001e-131  Shewanella baltica OS223  Bacteria  normal  0.0140274  normal 
 
 
-
 
NC_009438  Sputcn32_2546  response regulator receiver protein  59.79 
 
 
376 aa  466  9.999999999999999e-131  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1312  response regulator receiver protein  59.01 
 
 
367 aa  468  9.999999999999999e-131  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000399806  normal 
 
 
-
 
NC_008322  Shewmr7_1379  response regulator receiver protein  59.01 
 
 
367 aa  468  9.999999999999999e-131  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00673289  normal  0.16507 
 
 
-
 
NC_008577  Shewana3_1372  response regulator receiver protein  58.66 
 
 
367 aa  468  9.999999999999999e-131  Shewanella sp. ANA-3  Bacteria  normal  0.0119088  hitchhiker  0.0000873565 
 
 
-
 
NC_009665  Shew185_2906  response regulator receiver protein  59.64 
 
 
367 aa  467  9.999999999999999e-131  Shewanella baltica OS185  Bacteria  normal  0.0132666  n/a   
 
 
-
 
NC_009052  Sbal_2896  response regulator receiver protein  59.64 
 
 
367 aa  468  9.999999999999999e-131  Shewanella baltica OS155  Bacteria  hitchhiker  0.00201335  n/a   
 
 
-
 
NC_004347  SO_3196  response regulator  58.14 
 
 
367 aa  461  1e-129  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_3038  response regulator receiver protein  58.75 
 
 
367 aa  462  1e-129  Shewanella baltica OS195  Bacteria  normal  0.0232368  normal 
 
 
-
 
NC_010506  Swoo_1648  response regulator receiver protein  56.14 
 
 
367 aa  452  1.0000000000000001e-126  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0057956  normal 
 
 
-
 
NC_009831  Ssed_3036  response regulator receiver protein  56.66 
 
 
367 aa  453  1.0000000000000001e-126  Shewanella sediminis HAW-EB3  Bacteria  normal  0.697745  hitchhiker  0.00756104 
 
 
-
 
NC_008700  Sama_2267  response regulator receiver protein  58.38 
 
 
367 aa  441  1e-123  Shewanella amazonensis SB2B  Bacteria  normal  0.0287525  normal  0.0560142 
 
 
-
 
NC_009092  Shew_1396  response regulator receiver protein  56.92 
 
 
367 aa  432  1e-120  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00425013  normal  0.314583 
 
 
-
 
NC_009901  Spea_1391  response regulator receiver protein  53.11 
 
 
368 aa  405  1.0000000000000001e-112  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  32.16 
 
 
393 aa  149  7e-35  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_002947  PP_2165  response regulator  32.16 
 
 
393 aa  149  8e-35  Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  32.16 
 
 
393 aa  149  8e-35  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  30.46 
 
 
394 aa  146  6e-34  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_004578  PSPTO_2117  response regulator  31.58 
 
 
394 aa  145  1e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  31.1 
 
 
412 aa  143  4e-33  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  32.28 
 
 
412 aa  142  7e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  31.54 
 
 
394 aa  140  3e-32  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  28.49 
 
 
394 aa  140  4.999999999999999e-32  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  31.03 
 
 
394 aa  139  6e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  28.94 
 
 
399 aa  126  7e-28  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_32720  Response regulator  28.21 
 
 
394 aa  125  9e-28  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1082  response regulator  28.23 
 
 
367 aa  115  1.0000000000000001e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03091  hypothetical protein  29.22 
 
 
368 aa  110  3e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002881  response regulator  28.4 
 
 
368 aa  110  6e-23  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2828  response regulator receiver sensor signal transduction histidine kinase  41.3 
 
 
410 aa  107  5e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0568  response regulator  28.34 
 
 
368 aa  105  1e-21  Vibrio cholerae O395  Bacteria  hitchhiker  0.00216047  n/a   
 
 
-
 
NC_011769  DvMF_0064  histidine kinase  39.72 
 
 
598 aa  101  3e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_0913  response regulator receiver sensor hybrid histidine kinase  36.96 
 
 
544 aa  99.8  7e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0999  response regulator receiver modulated serine phosphatase  25.57 
 
 
602 aa  99.4  1e-19  Opitutus terrae PB90-1  Bacteria  normal  0.118416  hitchhiker  0.00369461 
 
 
-
 
NC_007519  Dde_0532  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  42.37 
 
 
715 aa  98.2  2e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1544  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  41.53 
 
 
739 aa  96.7  6e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.498595 
 
 
-
 
NC_007519  Dde_2457  metal dependent phosphohydrolase  31.97 
 
 
358 aa  96.3  7e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1419  signal transduction histidine kinase  40.18 
 
 
551 aa  95.9  1e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_3744  putative GAF sensor protein  32.18 
 
 
323 aa  95.1  2e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1959  response regulator of RpoS  28.85 
 
 
338 aa  94.4  3e-18  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2526  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36 
 
 
715 aa  93.6  6e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  0.263284  normal  0.0502692 
 
 
-
 
NC_013173  Dbac_2645  response regulator receiver modulated metal dependent phosphohydrolase  35.46 
 
 
364 aa  93.2  7e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_3074  response regulator receiver modulated metal dependent phosphohydrolase  27.98 
 
 
363 aa  92.4  1e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_3465  putative PAS/PAC sensor protein  31.39 
 
 
489 aa  91.7  2e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1380  response regulator receiver modulated diguanylate cyclase  40.52 
 
 
454 aa  90.9  3e-17  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00781234  n/a   
 
 
-
 
NC_013440  Hoch_1901  adenylate/guanylate cyclase  38.06 
 
 
381 aa  89.4  9e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  0.500403  normal 
 
 
-
 
NC_009483  Gura_1886  diguanylate cyclase  41.58 
 
 
462 aa  88.6  2e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0017  two component, sigma54 specific, Fis family transcriptional regulator  30.13 
 
 
459 aa  88.2  2e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  0.120309  normal 
 
 
-
 
NC_008751  Dvul_2096  signal transduction histidine kinase  30.39 
 
 
526 aa  88.6  2e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.0713574 
 
 
-
 
NC_012917  PC1_1979  response regulator of RpoS  38.74 
 
 
338 aa  87.8  3e-16  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.46167  n/a   
 
 
-
 
NC_008554  Sfum_0633  response regulator receiver protein  40.68 
 
 
133 aa  87.8  3e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.546392  normal 
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  39.17 
 
 
472 aa  87.8  3e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  35.38 
 
 
371 aa  87  5e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2201  response regulator of RpoS  27.16 
 
 
338 aa  86.7  6e-16  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2078  response regulator of RpoS  28.18 
 
 
338 aa  86.3  8e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2331  response regulator of RpoS  28.18 
 
 
338 aa  86.3  9e-16  Yersinia pestis Angola  Bacteria  hitchhiker  0.000591908  normal  0.501576 
 
 
-
 
NC_009708  YpsIP31758_1969  response regulator of RpoS  29.52 
 
 
338 aa  86.3  9e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.313928  n/a   
 
 
-
 
NC_007519  Dde_1522  histidine kinase  35.59 
 
 
544 aa  85.9  0.000000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1483  response regulator receiver modulated diguanylate cyclase  28.85 
 
 
335 aa  85.9  0.000000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.882912  n/a   
 
 
-
 
NC_008751  Dvul_2459  multi-sensor signal transduction histidine kinase  31.06 
 
 
489 aa  85.9  0.000000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.854352 
 
 
-
 
NC_013421  Pecwa_2280  response regulator of RpoS  34.46 
 
 
338 aa  85.1  0.000000000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0715238  n/a   
 
 
-
 
NC_010814  Glov_2461  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  30.73 
 
 
581 aa  84.3  0.000000000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1658  response regulator/GGDEF domain-containing protein  37.62 
 
 
458 aa  84  0.000000000000004  Geobacter sulfurreducens PCA  Bacteria  normal  0.939598  n/a   
 
 
-
 
NC_013132  Cpin_6438  putative two component, sigma54 specific, transcriptional regulator, Fis family  38.1 
 
 
394 aa  84.3  0.000000000000004  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.00615091  normal  0.383003 
 
 
-
 
NC_011831  Cagg_2467  response regulator receiver modulated serine phosphatase  25.17 
 
 
385 aa  84  0.000000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1875  response regulator receiver modulated metal dependent phosphohydrolase  38.14 
 
 
361 aa  84  0.000000000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0173  response regulator receiver protein  38.61 
 
 
121 aa  83.6  0.000000000000005  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  33.08 
 
 
374 aa  83.6  0.000000000000006  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_011891  A2cp1_1620  response regulator receiver protein  36.09 
 
 
127 aa  83.6  0.000000000000006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0904485  n/a   
 
 
-
 
NC_011145  AnaeK_1525  response regulator receiver protein  36.09 
 
 
127 aa  83.6  0.000000000000006  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1993  two component, sigma54 specific, transcriptional regulator, Fis family  32.56 
 
 
486 aa  82.8  0.000000000000008  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3097  diguanylate cyclase  39.66 
 
 
458 aa  82.8  0.000000000000009  Geobacter bemidjiensis Bem  Bacteria  normal  0.948135  n/a   
 
 
-
 
NC_007519  Dde_3536  two component Fis family transcriptional regulator  28.66 
 
 
447 aa  82.8  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0187  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
457 aa  82.4  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1165  diguanylate cyclase  39.66 
 
 
459 aa  82.4  0.00000000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000192138 
 
 
-
 
NC_011205  SeD_A1575  response regulator of RpoS  38.46 
 
 
337 aa  81.6  0.00000000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.307447  normal 
 
 
-
 
NC_011149  SeAg_B1392  response regulator of RpoS  38.46 
 
 
337 aa  81.6  0.00000000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00188361  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  31.29 
 
 
461 aa  81.6  0.00000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_009943  Dole_1364  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
485 aa  81.3  0.00000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1991  two component transcriptional regulator  34.91 
 
 
229 aa  81.6  0.00000000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.656084  n/a   
 
 
-
 
NC_007760  Adeh_2344  response regulator receiver domain-containing protein  36.09 
 
 
135 aa  81.6  0.00000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0313  response regulator receiver protein  33.61 
 
 
143 aa  81.6  0.00000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0254543  n/a   
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  33.61 
 
 
478 aa  82  0.00000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0868  multi-sensor signal transduction histidine kinase  38.68 
 
 
650 aa  82  0.00000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1886  response regulator of RpoS  38.46 
 
 
337 aa  81.6  0.00000000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0489347  normal  0.205124 
 
 
-
 
NC_011083  SeHA_C1943  response regulator of RpoS  38.46 
 
 
337 aa  81.6  0.00000000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.941531 
 
 
-
 
NC_011080  SNSL254_A1880  response regulator of RpoS  38.46 
 
 
337 aa  81.6  0.00000000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.239117  normal  0.804945 
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  36.44 
 
 
476 aa  82  0.00000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0209  two component transcriptional regulator, winged helix family  37.62 
 
 
251 aa  80.9  0.00000000000003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  35.29 
 
 
473 aa  80.9  0.00000000000003  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_011891  A2cp1_1183  two component, sigma54 specific, transcriptional regulator, Fis family  36.11 
 
 
481 aa  81.3  0.00000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  31.76 
 
 
445 aa  81.3  0.00000000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  31.76 
 
 
445 aa  81.3  0.00000000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  31.76 
 
 
445 aa  81.3  0.00000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  31.76 
 
 
445 aa  81.3  0.00000000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_011145  AnaeK_1114  two component, sigma54 specific, transcriptional regulator, Fis family  36.11 
 
 
501 aa  81.3  0.00000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  31.76 
 
 
445 aa  81.3  0.00000000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1123  two component, sigma54 specific, Fis family transcriptional regulator  31.76 
 
 
444 aa  80.9  0.00000000000004  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
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