More than 300 homologs were found in PanDaTox collection
for query gene SeD_A2938 on replicon NC_011205
Organism: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012912  Dd1591_1085  putative two component, sigma54 specific, transcriptional regulator, Fis family  85.39 
 
 
445 aa  789    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02446  predicted DNA-binding response regulator in two-component system  95.05 
 
 
444 aa  849    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1114  putative two component, sigma54 specific, transcriptional regulator, Fis family  95.05 
 
 
444 aa  849    Escherichia coli DH1  Bacteria  normal  0.922386  n/a   
 
 
-
 
NC_012917  PC1_3049  putative two component, sigma54 specific, transcriptional regulator, Fis family  87.64 
 
 
445 aa  805    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2768  putative two component, sigma54 specific, transcriptional regulator, Fis family  84.72 
 
 
445 aa  789    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  86.97 
 
 
445 aa  800    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02410  hypothetical protein  95.05 
 
 
444 aa  849    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2839  sigma-54 dependent response regulator  95.27 
 
 
444 aa  850    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2707  sigma-54 dependent response regulator  95.27 
 
 
444 aa  850    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2707  sigma-54 dependent response regulator  95.27 
 
 
444 aa  850    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  100 
 
 
445 aa  911    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  100 
 
 
445 aa  911    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  100 
 
 
445 aa  911    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E2919  sigma-54 dependent response regulator  95.05 
 
 
444 aa  849    Shigella boydii CDC 3083-94  Bacteria  normal  0.70731  n/a   
 
 
-
 
NC_009832  Spro_3651  two component, sigma54 specific, Fis family transcriptional regulator  87.87 
 
 
445 aa  806    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_3039  two component, sigma54 specific, Fis family transcriptional regulator  91.91 
 
 
445 aa  847    Enterobacter sp. 638  Bacteria  normal  0.992832  normal  0.337936 
 
 
-
 
NC_007963  Csal_0717  two component, sigma54 specific, Fis family transcriptional regulator  70.98 
 
 
466 aa  648    Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1259  two component, sigma54 specific, Fis family transcriptional regulator  87.19 
 
 
445 aa  806    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1152  sigma-54 dependent DNA-binding response regulator  87.19 
 
 
445 aa  806    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1123  two component, sigma54 specific, Fis family transcriptional regulator  95.05 
 
 
444 aa  849    Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  99.78 
 
 
445 aa  909    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3788  sigma-54 dependent response regulator  95.05 
 
 
444 aa  849    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3629  two-component system response regulator  87.19 
 
 
445 aa  806    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  99.78 
 
 
445 aa  909    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01723  two-component system response regulator  63.39 
 
 
446 aa  566  1e-160  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1603  two component, sigma54 specific, Fis family transcriptional regulator  61.31 
 
 
449 aa  555  1e-157  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0965  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.8 
 
 
462 aa  525  1e-148  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1117  two component, sigma54 specific, Fis family transcriptional regulator  57.56 
 
 
466 aa  525  1e-148  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4272  sigma-54 dependent response regulator  55.9 
 
 
457 aa  518  1e-146  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2786  two component, sigma54 specific, Fis family transcriptional regulator  58.01 
 
 
477 aa  516  1.0000000000000001e-145  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  57.11 
 
 
456 aa  515  1.0000000000000001e-145  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  57.11 
 
 
456 aa  515  1.0000000000000001e-145  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_007498  Pcar_0498  two component response regulator  59.86 
 
 
451 aa  508  1e-143  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0872  two component, sigma54 specific, Fis family transcriptional regulator  57.37 
 
 
471 aa  509  1e-143  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0650247 
 
 
-
 
NC_008781  Pnap_3376  two component, sigma54 specific, Fis family transcriptional regulator  57.24 
 
 
462 aa  510  1e-143  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.193945  normal 
 
 
-
 
NC_007484  Noc_0785  Fis family two component transcriptional regulator  58.78 
 
 
456 aa  501  1e-141  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1161  two component, sigma54 specific, Fis family transcriptional regulator  58.41 
 
 
453 aa  503  1e-141  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1340  two component, sigma54 specific, Fis family transcriptional regulator  57.02 
 
 
457 aa  503  1e-141  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1804  two component, sigma54 specific, Fis family transcriptional regulator  56.22 
 
 
469 aa  498  1e-140  Dechloromonas aromatica RCB  Bacteria  normal  0.0358984  normal  0.379225 
 
 
-
 
NC_002977  MCA1713  sigma-54 dependent DNA-binding response regulator  56.88 
 
 
460 aa  496  1e-139  Methylococcus capsulatus str. Bath  Bacteria  normal  0.91858  n/a   
 
 
-
 
NC_011901  Tgr7_2494  response regulator receiver protein  56.05 
 
 
452 aa  493  9.999999999999999e-139  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2568  two component, sigma54 specific, transcriptional regulator, Fis family  57.48 
 
 
457 aa  489  1e-137  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0491002  normal 
 
 
-
 
NC_011761  AFE_2955  sigma-54 dependent DNA-binding response regulator, putative  57.48 
 
 
457 aa  489  1e-137  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1222  putative two component, sigma54 specific, transcriptional regulator, Fis family  56.32 
 
 
475 aa  484  1e-135  Thauera sp. MZ1T  Bacteria  normal  0.20015  n/a   
 
 
-
 
NC_007404  Tbd_2771  two component Fis family transcriptional regulator  56.04 
 
 
449 aa  477  1e-133  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.195731 
 
 
-
 
NC_007520  Tcr_2187  two component, sigma54 specific, Fis family transcriptional regulator  53.06 
 
 
456 aa  471  1.0000000000000001e-131  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  48.12 
 
 
461 aa  427  1e-118  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  48.12 
 
 
461 aa  427  1e-118  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2292  two component, sigma54 specific, Fis family transcriptional regulator  47.01 
 
 
462 aa  394  1e-108  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4418  transcriptional regulatory protein ZraR  44.24 
 
 
441 aa  364  1e-99  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.298897  n/a   
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  45.31 
 
 
441 aa  363  3e-99  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_011083  SeHA_C4505  transcriptional regulatory protein ZraR  44.47 
 
 
441 aa  362  5.0000000000000005e-99  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.11324 
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  44.87 
 
 
441 aa  362  6e-99  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  44.87 
 
 
441 aa  361  1e-98  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
CP001637  EcDH1_3989  two component, sigma54 specific, transcriptional regulator, Fis family  44.87 
 
 
441 aa  362  1e-98  Escherichia coli DH1  Bacteria  normal  0.716922  n/a   
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  44.87 
 
 
441 aa  361  1e-98  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_011205  SeD_A4581  transcriptional regulatory protein ZraR  44.47 
 
 
441 aa  361  1e-98  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03834  hypothetical protein  44.87 
 
 
441 aa  361  1e-98  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
NC_011830  Dhaf_0198  two component, sigma54 specific, transcriptional regulator, Fis family  40.13 
 
 
461 aa  360  2e-98  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4385  transcriptional regulatory protein ZraR  44.24 
 
 
441 aa  360  2e-98  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.712665 
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  44.65 
 
 
441 aa  361  2e-98  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  44.75 
 
 
441 aa  360  3e-98  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_011080  SNSL254_A4507  transcriptional regulatory protein ZraR  44.02 
 
 
441 aa  359  5e-98  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0570238 
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  43.75 
 
 
453 aa  358  9.999999999999999e-98  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5475  transcriptional regulatory protein ZraR  44.98 
 
 
441 aa  358  9.999999999999999e-98  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1726  hypothetical protein  43.76 
 
 
437 aa  353  5e-96  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  43.54 
 
 
437 aa  350  2e-95  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009675  Anae109_3581  two component, sigma54 specific, Fis family transcriptional regulator  40.47 
 
 
490 aa  351  2e-95  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0374719 
 
 
-
 
NC_007517  Gmet_0702  two component, sigma54 specific, Fis family transcriptional regulator  40.97 
 
 
460 aa  350  3e-95  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2764  two component, sigma54 specific, Fis family transcriptional regulator  41.65 
 
 
466 aa  348  1e-94  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  41.11 
 
 
464 aa  347  2e-94  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  41.56 
 
 
463 aa  347  3e-94  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3471  two component, sigma54 specific, Fis family transcriptional regulator  39.61 
 
 
489 aa  345  7e-94  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  41.06 
 
 
473 aa  345  1e-93  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  40.49 
 
 
464 aa  344  2e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_007517  Gmet_2034  two component, sigma54 specific, Fis family transcriptional regulator  41.1 
 
 
449 aa  344  2e-93  Geobacter metallireducens GS-15  Bacteria  normal  0.0792682  normal  0.101595 
 
 
-
 
NC_007519  Dde_0879  two component Fis family transcriptional regulator  39.53 
 
 
488 aa  344  2e-93  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00000467826  n/a   
 
 
-
 
NC_008751  Dvul_2403  two component, sigma54 specific, Fis family transcriptional regulator  42.3 
 
 
467 aa  343  2.9999999999999997e-93  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.32958 
 
 
-
 
NC_011891  A2cp1_3623  two component, sigma54 specific, transcriptional regulator, Fis family  38.97 
 
 
489 aa  343  4e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.568637  n/a   
 
 
-
 
NC_013440  Hoch_2280  two component, sigma54 specific, transcriptional regulator, Fis family  41.33 
 
 
453 aa  343  4e-93  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.620123 
 
 
-
 
NC_011145  AnaeK_3555  two component, sigma54 specific, transcriptional regulator, Fis family  38.97 
 
 
489 aa  343  4e-93  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_007519  Dde_1685  two component Fis family transcriptional regulator  43.64 
 
 
457 aa  343  4e-93  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00529377  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  41.33 
 
 
451 aa  342  5e-93  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0963  sigma-54 dependent DNA-binding response regulator  40.48 
 
 
467 aa  342  8e-93  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  41.16 
 
 
473 aa  342  8e-93  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1657  two component, sigma54 specific, Fis family transcriptional regulator  46.61 
 
 
459 aa  342  9e-93  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.000574549  normal  0.302016 
 
 
-
 
NC_011769  DvMF_2095  two component, sigma54 specific, transcriptional regulator, Fis family  40 
 
 
471 aa  342  1e-92  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_2633  two component, sigma54 specific, transcriptional regulator, Fis family  40.69 
 
 
467 aa  341  2e-92  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0984  two component, sigma54 specific, Fis family transcriptional regulator  41.22 
 
 
455 aa  340  2e-92  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0215  two component, sigma54 specific, transcriptional regulator, Fis family  46.37 
 
 
528 aa  340  2.9999999999999998e-92  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0571306 
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  40.17 
 
 
458 aa  339  5.9999999999999996e-92  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0961  two component, sigma54 specific, Fis family transcriptional regulator  41.57 
 
 
454 aa  339  5.9999999999999996e-92  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  45.36 
 
 
463 aa  339  7e-92  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  40.97 
 
 
466 aa  338  8e-92  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_012918  GM21_2694  two component, sigma54 specific, transcriptional regulator, Fis family  39.43 
 
 
461 aa  338  9.999999999999999e-92  Geobacter sp. M21  Bacteria  n/a    hitchhiker  7.62039e-17 
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  40.18 
 
 
454 aa  338  9.999999999999999e-92  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  42.12 
 
 
453 aa  338  9.999999999999999e-92  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_013223  Dret_0970  two component, sigma54 specific, transcriptional regulator, Fis family  39.91 
 
 
473 aa  338  9.999999999999999e-92  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0157817  hitchhiker  0.00000223455 
 
 
-
 
NC_009483  Gura_1428  two component, sigma-54 specific, Fis family transcriptional regulator  39.96 
 
 
460 aa  338  1.9999999999999998e-91  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2039  two component, sigma54 specific, Fis family transcriptional regulator  41.72 
 
 
476 aa  337  1.9999999999999998e-91  Desulfovibrio vulgaris DP4  Bacteria  normal  0.238588  normal 
 
 
-
 
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