| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1544 |
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| Symbol | |
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| ID | 7173455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 1905797 |
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| End bp | 1908016 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643540058 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002435960 |
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| Protein GI | 218886639 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 0.498595 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCCACA GGCCTGCCCG CATTCTGACC ATCGACGACG ACGTCAACGT CCGCTCGAAT
CTGGTCGCCT ATCTCGAGGA CAGCGGCTTT GACGTAATCG AGGCCGAAAA CGGCCGCCGA
GGACTCGAAG CATTCACCGA ACACGCGCCT GACCTCGTGC TGGTTGATTT GCGCATGCCC
GTCATGGGGG GCATGGAAGT ACTGGAGCGC CTGCGCGAGG ACGCCCCGGA GATTCCCGTC
ATCGTGGTGT CGGGCGTGGG CGTGCTGGAA GAGGCGGTGG AGGCGCTGCG CCACGGCGCG
TGGGACTACG TGACCAAGCC GGTCACCGAC ATGCGCGTGC TGGAGCACGC CGTGAACAAG
GCGCTGGAGC GCGCCCGCCT GCTGGAGGAG CGCAAGCGCT ACCGCGAGCA CCTCGAACAG
GAGGTGCTGG AGCGCACCCG AGAACTGCGC GAGACCAACG AGCGGCTGGT GGAATACCAG
GCCCTGCTGC AAGAGAAAAA CCAGTTCCTC GAGGCCTTGG TGGAGGGCAT GCCCAACCCG
GTGTTCTACA AGACGCTGGA AGGCAACTAC ATCGGCTGCA ACCGCGCCTT CAGCCGCCTG
ATCGGTCGCG CCCCCGAAGA CATCGTGGGC CGTTCGGTGC ACGAGATACT GCCGCAGGAA
CAGGCCTGCC GCGTCGAGGA TTCCGGGCGG CGGCTGACCG TCCAGGACGA TGACGGAGCG
GGCTACTCGT GCATGATCGA CCTGCGCGAC GCCGCTGGCG AAGACAGGGT GCTGGTGCTG
TACAAGAGCT ATTTCCGCGA CCGCACCGGC CAGCGCGCGG GCGAGGTGGG CACGTTCCTT
GACGTCAGCG AGCTGAAACG CAAGGAAGCG CAGATCGTCC ACCAGGCCAC CCATGACGAG
CTGACCGGCC TGCCCAACCG CATGGGCCTG CGCCAGCGCA TGGAAGACCA TGCCCTGAAA
GGCGGGCCGG ATGCGCGGCT GGCGGTGCTG TATCTGGACA TGGACAATTT CAAGACCGTC
AACGACAGCC TGGGCCATGC CGTGGGCGAC GAACTGCTGC GCGCCGTGGC GGGCCGACTG
GTGGGCATGG CCCCCCGTCG CGACATGGTG GCGCGCCTTG GCGGCGACGA GTTCGTGGTG
CTGCTGCCGC TGTCGGCGGA AGGCGACGGA GAGCTGGCCG AGACGGAATC GGCCCGCATT
CAGGACTCGT TCACCCGGCC CTTCAACGCC GCCGACCACG AACTGTACGT GATGCCGTCC
ATCGGCATCA GCGTTGCACC CGAAGACGGA CGCGACCCGG CCACCCTGCT GAAGAACGCG
GAAATCGCCA TGTACCGCGC CAAGGAGCAG GGCGGCGCGC GTTTCCGCCG CTTTACCCAG
GCCATGAACG ACGACGTCAC GCGGCGCCTG GCCATCGAAA AGAGCATCCG CAAGGGGCTG
GAAAACGACG AGTTCGTGGT GTTCTACCAG CCGCGCGTGG ACATAGTGAC CGGGCAGGTC
ACCGGCATGG AGGCGCTGGT GCGCTGGGCC CGCCCCGACG GCACCCTGGT GCCGCCGCTG
GAGTTCATTC CCGTGGCGGA AGACACCGGC CTCGTGGTGG CGCTGGGCGA ACGGGTACTG
CGCGATGCGT GCATCCAGAC CCGCCGCTGG ACCGACGAGC TTGGCCCGCT GCGCATCGCC
GTGAACATCT CGGCCCGGCA GTTCCAGCCG GACCTGCTGG ACCGGGTGCA GGCGGCCCTG
GCCGAATCGG GCCTGCCGCC CTCGCAGCTG GAGCTGGAAA TTACCGAAAC CACCATGATG
CGCGACCTGC CCACCTCGGT GGCCATTCTG GAGCGGCTGG CGGCGCAGGG CATCTCCATC
GCCATCGACG ACTTCGGCAC CGGGCATTCC TCGCTGTACT ACCTGAAGAA CTTCCCCATC
GACACCATCA AGATCGACCG TTCGTTCGTG CGCGACGTGC CCGGCGACGA GGGCGACGCC
ACCATCGTTT CCACCATCGT CACCATGGGG CGCAACCTGT CGCTGAACGT GGTGGCCGAA
GGCGTGGAAA CCGACGACCA GTTGGGCTTC CTGCGCGCCC ACGGCTGCCG CGAGGTGCAG
GGCTACTACT ACAGCAAGCC CCTGCCCGCG GACGGGTTTG CGGACTGGAT GCGAGCGGCG
CTTGCCGCAG GGTCCGCAGG CGCCGCAGGG GCCGCAGGGG CCGCGAGCAG CCGGAAGTAG
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| Protein sequence | MLHRPARILT IDDDVNVRSN LVAYLEDSGF DVIEAENGRR GLEAFTEHAP DLVLVDLRMP
VMGGMEVLER LREDAPEIPV IVVSGVGVLE EAVEALRHGA WDYVTKPVTD MRVLEHAVNK
ALERARLLEE RKRYREHLEQ EVLERTRELR ETNERLVEYQ ALLQEKNQFL EALVEGMPNP
VFYKTLEGNY IGCNRAFSRL IGRAPEDIVG RSVHEILPQE QACRVEDSGR RLTVQDDDGA
GYSCMIDLRD AAGEDRVLVL YKSYFRDRTG QRAGEVGTFL DVSELKRKEA QIVHQATHDE
LTGLPNRMGL RQRMEDHALK GGPDARLAVL YLDMDNFKTV NDSLGHAVGD ELLRAVAGRL
VGMAPRRDMV ARLGGDEFVV LLPLSAEGDG ELAETESARI QDSFTRPFNA ADHELYVMPS
IGISVAPEDG RDPATLLKNA EIAMYRAKEQ GGARFRRFTQ AMNDDVTRRL AIEKSIRKGL
ENDEFVVFYQ PRVDIVTGQV TGMEALVRWA RPDGTLVPPL EFIPVAEDTG LVVALGERVL
RDACIQTRRW TDELGPLRIA VNISARQFQP DLLDRVQAAL AESGLPPSQL ELEITETTMM
RDLPTSVAIL ERLAAQGISI AIDDFGTGHS SLYYLKNFPI DTIKIDRSFV RDVPGDEGDA
TIVSTIVTMG RNLSLNVVAE GVETDDQLGF LRAHGCREVQ GYYYSKPLPA DGFADWMRAA
LAAGSAGAAG AAGAASSRK
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