Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_3465 |
Symbol | |
ID | 3758443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | + |
Start bp | 3425558 |
End bp | 3427027 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637784378 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_389953 |
Protein GI | 78358504 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAACCG CACCGGCACA ACAGGCCACG GTACTTACGG TGGAAGATGA CCCTGTCATC CGCGAAACCA TAGCAGCCTG GCTGGAGGAT TCCGGCCTGA CCGTGCTGCA GGCCGAAGAC GGCAGCAAAG GTCTGGACGT TTTCCGCAGG CACACACCAG ACCTTGTACT GCTGGATCTC GGCATTCCCG GCATGAGCGG TGAAAGCCTG CTCAAGCTCA TGGTGCAGGA ACAGCCCGAC ACGCCGGTCA TCATCGTTTC CGGCACGGCG GAAATAGACG CCGCCATCAG CGCCTTCAAG AACGGCGCAT GGGATTTCAT CACCAAACCC GTGCCCAATA TGGAACTGCT GGAAAAAACC GTGCGGAACT GTCTGGAACG CAAATCACTG CGCGAACGGC TGGACGCCGC AGAGACCCGC TATTTCCAGT TCATCCAGCA TCTGCCCGTG ACGGTGTTTT CCATGGACGG CAGCATGCAG GTCACATGGC TCAATGCCGC ATGCCCCAGA GTGCTGGGCT GGCCCGTGGC AGAAGCGCTG GGGACGGAAA ACTGGTTCAT GGATAACGTG CACCCGCCGG ACAGGCCCGC ACTGCAACAG GCACTGGAAG CCGCGCTGCA GCGCGGGAAC GACATTTTCT GCGAATTTTC ATTCCGCCAC CGCCACGGCT ACCTTATCCG CCTGCAGGCG CGCTCCACAT CCGTATCTGC TCCGGACGCT GCGCGCGCGG GCAGAATCGA AGGCGTTCTG CTTGATATCA CCGACCGCGA TTTTCTGGAT AAGGTGCTTG TGCAGCGCGA AAAACTGAAC ACGCTGGGAG CCATGGCCGA TGAAGTGGCC CATGAATTCC GCAACCCGCT GTTTGCGCTG GGCGGTTTTG CACGCAGACT GCATACGCGC ATGCCCGACA TCATGGAGGC CGGCATCATT CTGGAAGAAG CAAAACGCAT GGAAACCATG CTGGACAGGC TAAAAGAGTA CACCAGCCCT GTGGACGTCT CGCCGGAACC CACCAATGTC AACACATCCG TCAATTTTGC GCTGGACAGG CTGGAACCTC AGATAGCCAG ACGCCGGGCG GCCGTTTCCA GCAATCTGGA AGCCGGCATG CCGGAAATAC AGTCCGATCC CGACATTCTG CTGCAGGTGC TCATGAATCT GGTGACCAAC CTGCTGGATG CCATGCCTGA AGGCGAAACG CTGCGGCTGA TCACCTCACA AAGTGCCGGA ACACAGGAAG TGACGCTCAT GGCACCGGTG CAGGGCACGC CCATGGCCGA CCCCGAACAG CTGCTGCTGC CCTTTGACGT TTCCGGACCG CAAAGAAACC TTGCGGTAAG TTACCGGCTG GTAAAAACCA TCGGCGGGCT GCTGTCCGTC ACCCGCAGCC ACAACGTGCA TACGCTTACT CTTTCGCTGC CCGCCGGACA CGACAGCCGC GTACCCGGCA CGGGTGCCGG TGCTTCCTGA
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Protein sequence | MQTAPAQQAT VLTVEDDPVI RETIAAWLED SGLTVLQAED GSKGLDVFRR HTPDLVLLDL GIPGMSGESL LKLMVQEQPD TPVIIVSGTA EIDAAISAFK NGAWDFITKP VPNMELLEKT VRNCLERKSL RERLDAAETR YFQFIQHLPV TVFSMDGSMQ VTWLNAACPR VLGWPVAEAL GTENWFMDNV HPPDRPALQQ ALEAALQRGN DIFCEFSFRH RHGYLIRLQA RSTSVSAPDA ARAGRIEGVL LDITDRDFLD KVLVQREKLN TLGAMADEVA HEFRNPLFAL GGFARRLHTR MPDIMEAGII LEEAKRMETM LDRLKEYTSP VDVSPEPTNV NTSVNFALDR LEPQIARRRA AVSSNLEAGM PEIQSDPDIL LQVLMNLVTN LLDAMPEGET LRLITSQSAG TQEVTLMAPV QGTPMADPEQ LLLPFDVSGP QRNLAVSYRL VKTIGGLLSV TRSHNVHTLT LSLPAGHDSR VPGTGAGAS
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