| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3036 |
|---|
| Symbol | |
|---|
| ID | 5613368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3669839 |
|---|
| End bp | 3670942 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933973 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_001474768 |
|---|
| Protein GI | 157376168 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.697745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00756104 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTAA AAGATTTAGT CATTCTACTT GTTGAAGATG ATCCTGTTTT TCGTCGTATC
GTTGCATCGT TTCTCGATAG CCGCGGTGCG ACGGTTATCG AAGCCGATGA TGGCGAACAG
GGGCTGGAAA AGTTTAAGCA AAGAGCTTTC GATATTGTCC TGGCCGATCT CAGTATGCCG
ATAATGGGCG GTTTGGTCAT GCTCAAGAAG ATGTCTGAGT TAAATCCCGG CACACCGTCA
ATCGTTATAT CCGGTAATCA GGTCATGGCA GATGTCGTTG AGGCGCTGCG TATTGGCACA
AGCGATTACT TAGTTAAGCC TGTCTCCGAT CTATTTCTCA TCGAAAATGC GATAAAGCAG
AGCCTGGATG AGAAACACAC TAAAGATGTT CAACTCGAAG ATATCGAGGA GCTCTCCTAT
CAGGAGTTGC AGGATAACCT GGCGCTGTTA GAACAAAATG CCGAAGCGGC TAAGAGTGTT
CAGCAGCAGT TATTCCCCCC GTCACAGATT AACTATCTCA CCGCCAAAAT TGACTACAGC
CTGTTTAAGA CCGATGAGGT GAGTGCTTAC TTTATCGATA CGGTCAATGT CGGCGATAAA
CATCTTGTGA TGTATATGGC TCATTTTCAC CCTCAGGATA ATCGCGCGGC TTTCGCCAGC
GTCTTGCTTA AGAGTTTCGT TAATCAAAAG CTGAAGTTGT TTCGCAATGG CACCACTCAG
GCGATCATCG AACCCTACAA CATGCTCACT TATCTCAATG AACGCATGAC AAAATCAGGT
TTAGATATCT GTATCGATAT TGTCTATGTG GTGGTAGAGC TGACTAAATA CCGCGCATCG
ATAGCGCAAG CCGGCCAAGG TTTACGTTGT TACATCAGAA ATAACGAAGG ATTAACGCCT
CTCGCGCTCT CAGACTCTCT CCAGCTTGGA ATATTGGATT GGGGGCACCC AAGTGCTCAG
TTCAGGACTT TAATGCCCGG AGAGCAGCTA TGTATCTCTT CAAGTAAGCC CGTCCATAAG
CAGATGTTAC TCGAAAACCA ATTCCACGGT CTCGTCTACG ACACCCAAAC CCCCACCGGC
GGCTATGTGC AGTTGTCGTT TTAA
|
|---|
| Protein sequence | MALKDLVILL VEDDPVFRRI VASFLDSRGA TVIEADDGEQ GLEKFKQRAF DIVLADLSMP
IMGGLVMLKK MSELNPGTPS IVISGNQVMA DVVEALRIGT SDYLVKPVSD LFLIENAIKQ
SLDEKHTKDV QLEDIEELSY QELQDNLALL EQNAEAAKSV QQQLFPPSQI NYLTAKIDYS
LFKTDEVSAY FIDTVNVGDK HLVMYMAHFH PQDNRAAFAS VLLKSFVNQK LKLFRNGTTQ
AIIEPYNMLT YLNERMTKSG LDICIDIVYV VVELTKYRAS IAQAGQGLRC YIRNNEGLTP
LALSDSLQLG ILDWGHPSAQ FRTLMPGEQL CISSSKPVHK QMLLENQFHG LVYDTQTPTG
GYVQLSF
|
|---|
| |